PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0527s0040.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | bHLH | ||||||||
Protein Properties | Length: 299aa MW: 33565.8 Da PI: 4.53 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.5 | 7.5e-06 | 174 | 218 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +++ r RR++i ++ + L +l+P K++ ae+ + A +Y+k Lq SapurV1A.0527s0040.1.p 174 SIAARERRRKITEKTQDLGKLIPGgH------KMNTAEMFQAASKYVKFLQ 218 67889******************955......******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.541 | 168 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.12E-7 | 171 | 221 | No hit | No description |
SuperFamily | SSF47459 | 5.1E-10 | 171 | 226 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.6E-9 | 172 | 224 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.0E-7 | 174 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MALSFCSNWG SSLQHHNLQE ITEYPQCDVE IGNDQFFACN DSLMFSDAFI NPLYEVEEQL 60 VYSDSYTNLL PHFSSPSDNM ISLAPEIFPP EDFESYHCLK RPKTYTHHFN STFEPSFFEG 120 YAPNPNPGFP EFFSEIPAPE PMFQVPVTFN VGRTDQTGMN SKKPSTGGSL STQSIAARER 180 RRKITEKTQD LGKLIPGGHK MNTAEMFQAA SKYVKFLQAQ IGVLELMGST QGNKGTMPTQ 240 ELQTLLITSP TIQEKLYSEE KCLVPRDFVQ TIANDCQIQS KPLIIEEIDQ FLGDQLLG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0527s0040.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002317694.1 | 0.0 | transcription factor bHLH52 | ||||
Swissprot | Q84RD0 | 7e-33 | BH053_ARATH; Transcription factor bHLH53 | ||||
TrEMBL | B9I0X7 | 0.0 | B9I0X7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0011s16100.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3459 | 30 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34820.1 | 3e-35 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0527s0040.1.p |
Publications ? help Back to Top | |||
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