PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0507s0230.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GRAS
Protein Properties Length: 623aa    MW: 69125.9 Da    PI: 5.5484
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0507s0230.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS50.73.2e-16284367185
                    GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                             lv+lL++c+ea++ ++ + ++++La+l elasp+g p+ Rlaay+teALa r++r +++++++ +p+e ++   +++ +al+l++
  SapurV1A.0507s0230.2.p 284 LVSLLTACVEAITLKNIAGIDHILAELGELASPKGIPISRLAAYYTEALALRVTRLWPHIFHITAPRELDR-VDDDSGTALRLLN 367
                             6899************************************************************9999974.4455555666665 PP
2GRAS271.52.6e-83367607129374
                    GRAS 129 lqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlld 215
                              q+LasR+++p ++RiTg+g+    sk+el+etg+rLa fAe+l++pfef++ v++rled++l++L++k++E++a+n+v+q+h++l 
  SapurV1A.0507s0230.2.p 367 NQSLASRTNPPSHVRITGIGE----SKQELNETGDRLAGFAEALNLPFEFHP-VVDRLEDVRLWMLHIKERECVAINCVFQMHKTLY 448
                             599******************....***************************.7*******************************95 PP

                    GRAS 216 esvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvaceg 302
                             +    +   +++L l++s++P +v v+eqea+hn++sF +r++++l++ysalfds++++lp +s  rik+E++  +rei+n+vaceg
  SapurV1A.0507s0230.2.p 449 DGSGGA--LRDFLGLIRSTNPAIVLVAEQEAEHNAPSFETRVCNSLKFYSALFDSIDSSLPFDSPVRIKIEEM-YAREIRNIVACEG 532
                             543333..589**************************************************************.89*********** PP

                    GRAS 303 aerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkdrpLvsvSaWr 374
                             ++r erhe + kW++ +e+ G++ v++se+++ q ++ll++++ d y+v+   +e ++l+l W d+pL++vSaW+
  SapurV1A.0507s0230.2.p 533 SDRHERHEMFDKWKNLMEQGGLRCVAVSEREMLQSQMLLKMYSCDSYQVKmhgQEGAALTLSWLDQPLYTVSAWK 607
                             *******************************************999****7766677888**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098529.543366584IPR005202Transcription factor GRAS
PfamPF035149.2E-81367607IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 623 aa     Download sequence    Send to blast
MLAGCSSSTL LSPRHRLRSE SPAQFQACHF QLPSMSTQRL DLPCTFSRKE SSRSQSIRPV  60
GVGLSVDKPL ESKTSSCSLK QNIRLPPLAT SNQSVKDEFW EKGKSLKRFA EQTVDESCVN  120
RVKRKRGNND NVRPDDFYEG GDSLSLGQLG SGNFWFQPSL EVPRGLNPQQ FPISFTRSGD  180
EERVCFVPSE VISPPMPLSN NPWVGSVITE ITGLGEKDGE SSQRPVKEAS GSSNSSESQN  240
LGLRLSENVV EHEVGNGSRN PYPQEGAVME AAETDQREFQ GFDLVSLLTA CVEAITLKNI  300
AGIDHILAEL GELASPKGIP ISRLAAYYTE ALALRVTRLW PHIFHITAPR ELDRVDDDSG  360
TALRLLNQSL ASRTNPPSHV RITGIGESKQ ELNETGDRLA GFAEALNLPF EFHPVVDRLE  420
DVRLWMLHIK ERECVAINCV FQMHKTLYDG SGGALRDFLG LIRSTNPAIV LVAEQEAEHN  480
APSFETRVCN SLKFYSALFD SIDSSLPFDS PVRIKIEEMY AREIRNIVAC EGSDRHERHE  540
MFDKWKNLME QGGLRCVAVS EREMLQSQML LKMYSCDSYQ VKMHGQEGAA LTLSWLDQPL  600
YTVSAWKPVD IAGSSSSFSQ PS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-4429160826380Protein SCARECROW
5b3h_A6e-4429160825379Protein SCARECROW
5b3h_D6e-4429160825379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0507s0230.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002299559.10.0scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLB9GKM90.0B9GKM9_POPTR; Uncharacterized protein
STRINGPOPTR_0001s08850.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein