PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0507s0230.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GRAS
Protein Properties Length: 667aa    MW: 74306 Da    PI: 5.772
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0507s0230.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS431.85.1e-1322846511374
                    GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                             lv+lL++c+ea++ ++ + ++++La+l elasp+g p+ Rlaay+teALa r++r +++++++ +p+e + +  +++ +al+l+++v
  SapurV1A.0507s0230.1.p 284 LVSLLTACVEAITLKNIAGIDHILAELGELASPKGIPISRLAAYYTEALALRVTRLWPHIFHITAPRELD-RVDDDSGTALRLLNQV 369
                             6899***************************************************************998.5678888999****** PP

                    GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgv 174
                             sPi+kf h+taN+++l+a+eg++rvHiiDfdi+qGlQWp+L+q+LasR+++p ++RiTg+g+    sk+el+etg+rLa fAe+l++
  SapurV1A.0507s0230.1.p 370 SPIPKFIHFTANEMLLRAFEGKDRVHIIDFDIKQGLQWPTLFQSLASRTNPPSHVRITGIGE----SKQELNETGDRLAGFAEALNL 452
                             **************************************************************....********************* PP

                    GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261
                             pfef++ v++rled++l++L++k++E++a+n+v+q+h++l +    +   +++L l++s++P +v v+eqea+hn++sF +r++++l
  SapurV1A.0507s0230.1.p 453 PFEFHP-VVDRLEDVRLWMLHIKERECVAINCVFQMHKTLYDGSGGA--LRDFLGLIRSTNPAIVLVAEQEAEHNAPSFETRVCNSL 536
                             ******.7*******************************95543333..589*********************************** PP

                    GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg 348
                             ++ysalfds++++lp +s  rik+E++  +rei+n+vaceg++r erhe + kW++ +e+ G++ v++se+++ q ++ll++++ d 
  SapurV1A.0507s0230.1.p 537 KFYSALFDSIDSSLPFDSPVRIKIEEM-YAREIRNIVACEGSDRHERHEMFDKWKNLMEQGGLRCVAVSEREMLQSQMLLKMYSCDS 622
                             ***************************.89******************************************************999 PP

                    GRAS 349 yrve...eesgslvlgWkdrpLvsvSaWr 374
                             y+v+   +e ++l+l W d+pL++vSaW+
  SapurV1A.0507s0230.1.p 623 YQVKmhgQEGAALTLSWLDQPLYTVSAWK 651
                             ****7766677888**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.45258628IPR005202Transcription factor GRAS
PfamPF035141.8E-129284651IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MLAGCSSSTL LSPRHRLRSE SPAQFQACHF QLPSMSTQRL DLPCTFSRKE SSRSQSIRPV  60
GVGLSVDKPL ESKTSSCSLK QNIRLPPLAT SNQSVKDEFW EKGKSLKRFA EQTVDESCVN  120
RVKRKRGNND NVRPDDFYEG GDSLSLGQLG SGNFWFQPSL EVPRGLNPQQ FPISFTRSGD  180
EERVCFVPSE VISPPMPLSN NPWVGSVITE ITGLGEKDGE SSQRPVKEAS GSSNSSESQN  240
LGLRLSENVV EHEVGNGSRN PYPQEGAVME AAETDQREFQ GFDLVSLLTA CVEAITLKNI  300
AGIDHILAEL GELASPKGIP ISRLAAYYTE ALALRVTRLW PHIFHITAPR ELDRVDDDSG  360
TALRLLNQVS PIPKFIHFTA NEMLLRAFEG KDRVHIIDFD IKQGLQWPTL FQSLASRTNP  420
PSHVRITGIG ESKQELNETG DRLAGFAEAL NLPFEFHPVV DRLEDVRLWM LHIKERECVA  480
INCVFQMHKT LYDGSGGALR DFLGLIRSTN PAIVLVAEQE AEHNAPSFET RVCNSLKFYS  540
ALFDSIDSSL PFDSPVRIKI EEMYAREIRN IVACEGSDRH ERHEMFDKWK NLMEQGGLRC  600
VAVSEREMLQ SQMLLKMYSC DSYQVKMHGQ EGAALTLSWL DQPLYTVSAW KPVDIAGSSS  660
SFSQPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-7229165225379Protein SCARECROW
5b3h_D5e-7229165225379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0507s0230.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002299559.10.0scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLB9GW730.0B9GW73_POPTR; GRAS family protein
STRINGPOPTR_0001s08850.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91613244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein