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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0504s0110.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | Trihelix | ||||||||
Protein Properties | Length: 371aa MW: 41156.4 Da PI: 6.6881 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 47.3 | 5.4e-15 | 72 | 159 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpyfd 83 +W++ + +Li+a e+ +l+rg+lk+++W++v++ + +++ +++s+k qCk++++ ++k+yk +k+ + ++ + +s++p+fd SapurV1A.0504s0110.1.p 72 CWSEGATGVLIDAWGERYLELSRGNLKQKHWKDVAEIVsSREDYSKSAKtdiQCKNRIDTVKKKYKLEKAKMASG--GGVSSWPFFD 156 7*************************************867778877754449********************97..67779***** PP trihelix 84 qle 86 l+ SapurV1A.0504s0110.1.p 157 PLD 159 997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.6E-24 | 70 | 161 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MDDDDDIQSH SNTTESPSPS PPPPNGRITV TASTTATVPP PPPPQQTDNS LALVLPTKSK 60 VNGGGGGGRE DCWSEGATGV LIDAWGERYL ELSRGNLKQK HWKDVAEIVS SREDYSKSAK 120 TDIQCKNRID TVKKKYKLEK AKMASGGGVS SWPFFDPLDR LIGSTARVPA IESGCKFPVA 180 IPVRVRSSTS RRAGTNHYHF RTNQNMKTRN RKWGKDDDDE EEEEEEEEEE EEEEEEGGSF 240 PPQKKRRVVV EREPSGKGGG GGKEKKGGWG NSIRMLTQAM LKFGEAYEQA ETAKLQQVVE 300 MEKTRMKFAK ELELQRMQFF MQTQMEISQL KNGRKGGNAS GNHYHHNHNN HHTGNNITAS 360 NNVNNSDSDN * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0504s0110.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024461013.1 | 1e-173 | trihelix transcription factor ASIL2 | ||||
Swissprot | Q9LJG8 | 3e-87 | ASIL2_ARATH; Trihelix transcription factor ASIL2 | ||||
TrEMBL | A0A2K2B9V5 | 1e-133 | A0A2K2B9V5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s06330.1 | 1e-150 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7919 | 30 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14180.1 | 2e-64 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0504s0110.1.p |