PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0502s0220.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 208aa    MW: 23289.1 Da    PI: 7.8242
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0502s0220.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.32.8e-083983554
                            HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                            +  +ErrRR+++ s++ +Lr l+P       + ++K +i e A+ Y ++L
  SapurV1A.0502s0220.1.p 39 KLHAERRRREKLSSRLLTLRALVPII-----TNMNKGTIIEDAIAYTQEL 83
                            5679*********************6.....58*************8877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-132697IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.70E-93388No hitNo description
PROSITE profilePS5088813.4973483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-123698IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.4E-63883IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-94089IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MESFAMDELG LAGQEGSCRG RMGRGKSSYD DTVDYKSKKL HAERRRREKL SSRLLTLRAL  60
VPIITNMNKG TIIEDAIAYT QELKKKVEVL TGMLQEMEVT SSEEEITTRI NEIGACEEMK  120
RCGIKEDVQV TTIEGEKLWI KIILEKKRGR FSRLMEKMSC FGLELIDSNL TTSKGAMLVT  180
ACVEGALGET FTVQQTKELL LQILKGI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14247ERRRRE
24348RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0502s0220.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011003414.11e-110PREDICTED: transcription factor DYSFUNCTIONAL TAPETUM 1
RefseqXP_024455681.11e-111transcription factor DYT1
TrEMBLA0A2K2AP271e-111A0A2K2AP27_POPTR; Uncharacterized protein
STRINGPOPTR_0004s02920.12e-93(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55102948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.12e-24bHLH family protein