PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0500s0240.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | LBD | ||||||||
Protein Properties | Length: 226aa MW: 25498.7 Da PI: 8.9922 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 111.9 | 4.3e-35 | 19 | 115 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 aCa+Ck++r++C+++C+lapyfpae++ +f++vhk+FG+snv+kl+k++ e+r+++++slv+eA +r++dP+ G++g +++l+++ SapurV1A.0500s0240.1.p 19 ACASCKHQRKRCTENCALAPYFPAEKTLEFQAVHKVFGVSNVVKLVKDVIAERRKETVDSLVWEALCRQNDPILGCYGKLKRLKEEF 105 7************************************************************************************** PP DUF260 88 eqlkaelall 97 ++ +++ +l SapurV1A.0500s0240.1.p 106 DSYRTQHPSL 115 9998876555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.206 | 18 | 120 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.0E-33 | 19 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MQRGSNSSNI NNRMLAHPAC ASCKHQRKRC TENCALAPYF PAEKTLEFQA VHKVFGVSNV 60 VKLVKDVIAE RRKETVDSLV WEALCRQNDP ILGCYGKLKR LKEEFDSYRT QHPSLNQNQL 120 GQHHGSVVFN SKQSPTMVSR TNNRGNGIGG GLASNNMASY DNEKMIFDSI QHSYHWNYVQ 180 STLDISKQER DASSLLLLQS PPPPPPLPQH HSFNGFNQQQ YYLPE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-22 | 20 | 121 | 12 | 120 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-22 | 20 | 121 | 12 | 120 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00128 | DAP | Transfer from AT1G06280 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0500s0240.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024446755.1 | 1e-100 | LOB domain-containing protein 2 | ||||
Swissprot | Q9LNB9 | 1e-37 | LBD2_ARATH; LOB domain-containing protein 2 | ||||
TrEMBL | A0A3N7HDC4 | 3e-99 | A0A3N7HDC4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0019s12200.1 | 2e-99 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12722 | 25 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06280.1 | 8e-39 | LOB domain-containing protein 2 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0500s0240.1.p |