PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0499s0060.7.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | ARF | ||||||||
Protein Properties | Length: 679aa MW: 76838.4 Da PI: 8.9768 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.1 | 6.8e-23 | 140 | 241 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 f+k lt sd++++g +++ k++a+e+ +++++ ++l+ +d++g++W++++i+r++++r++l++GW+ Fv+a++L +gD ++ SapurV1A.0499s0060.7.p 140 FCKMLTASDTSTHGGFSVLKRHADEClppldmSLQPPV-QELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSLFVSAKKLVAGDAFI 225 89*****************************9666655.49********************************************** PP EEE-SSSEE..EEEEE-S CS B3 82 Fkldgrsefelvvkvfrk 99 F + +++el+v+v+r+ SapurV1A.0499s0060.7.p 226 FL--RGETEELRVGVRRA 241 **..3489999****985 PP | |||||||
2 | Auxin_resp | 117.2 | 1.4e-38 | 266 | 348 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+st+s+F+v+Y+Pr+s++eF+++++k+++++k++++vGmRfkm+fe e+++e+r+ Gtv+gv+++dp +Wp+S+Wr+Lk SapurV1A.0499s0060.7.p 266 AWHAVSTGSMFTVYYKPRTSPAEFIIPIDKYKESVKINYAVGMRFKMRFEAEEAPEQRFCGTVIGVEEADPKKWPRSNWRCLK 348 89*******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.9E-39 | 134 | 255 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.94E-39 | 134 | 269 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.54E-19 | 138 | 240 | No hit | No description |
PROSITE profile | PS50863 | 11.42 | 140 | 242 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.4E-21 | 140 | 242 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.7E-21 | 140 | 241 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 4.0E-35 | 266 | 348 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 679 aa Download sequence Send to blast |
MINRSNSVDI NRNGIARRSW SFPVSCEGSE DALYKELWHA CAGPLVTVPR QGELVYYFPQ 60 GHIEQVEAST NQVADDQQMP AYNLSSKILC RVVNVQLKAE LDTDEVFAQV ILLPETQQDV 120 ELVEEEDLPP PPTRPRVHSF CKMLTASDTS THGGFSVLKR HADECLPPLD MSLQPPVQEL 180 VAKDLHGNEW RFRHIFRGQP RRHLLQSGWS LFVSAKKLVA GDAFIFLRGE TEELRVGVRR 240 ALRQPSKIPS SVISSHSMHI GILATAWHAV STGSMFTVYY KPRTSPAEFI IPIDKYKESV 300 KINYAVGMRF KMRFEAEEAP EQRFCGTVIG VEEADPKKWP RSNWRCLKVH WDETSTVHRP 360 DRVSPWKVEP ALAPSMDPVS GCRLKRHRSK TVTSSADSST LTMKDNGPSR HVQHQEIMTL 420 RNTPTGKYYL DNNHNPPWVI SQGTGTLLKS YESSRPFFDQ PSKLPSDEKS MFNWHSAPMM 480 HAGHPLNMLA SSMEGQVAKD KDRLQQHGSW FSSLPYANSS PHPLSSKPQH LPFQQCNVRT 540 SKDDNCKLFG FSLFGNYKAP EPATIHRHSA DKPQQQINVA SDHLQLLGSD RFLEQLKHPK 600 HARCEEQGNI FQASAFQSKD VQGNPKGGSV RRCVKVVTYF NAVIKTPFIN NIFLFTLDMK 660 LQFVCGLYWL RFTSTGLR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-168 | 31 | 370 | 17 | 354 | Auxin response factor 1 |
4ldw_A | 1e-168 | 31 | 370 | 17 | 354 | Auxin response factor 1 |
4ldw_B | 1e-168 | 31 | 370 | 17 | 354 | Auxin response factor 1 |
4ldx_A | 1e-168 | 31 | 370 | 17 | 354 | Auxin response factor 1 |
4ldx_B | 1e-168 | 31 | 370 | 17 | 354 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Functions independently of ethylene and cytokinin response pathways. May act as a repressor of cell division and organ growth. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952, ECO:0000269|PubMed:16339187}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0499s0060.7.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC208482 | 0.0 | AC208482.1 Populus trichocarpa clone JGIACSB13-H05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002303753.3 | 0.0 | auxin response factor 2 isoform X2 | ||||
Swissprot | Q94JM3 | 0.0 | ARFB_ARATH; Auxin response factor 2 | ||||
TrEMBL | A0A2K2B838 | 0.0 | A0A2K2B838_POPTR; Auxin response factor | ||||
STRING | POPTR_0003s16210.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 0.0 | auxin response factor 2 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0499s0060.7.p |