PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0494s0210.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GATA
Protein Properties Length: 135aa    MW: 15029.4 Da    PI: 9.8762
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0494s0210.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.51.5e-171650135
                    GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                            C+ C+tt Tp+WR gp g++tLCnaCG+++rkk++
  SapurV1A.0494s0210.2.p 16 CTDCQTTRTPCWRGGPAGPRTLCNACGIRQRKKRR 50
                            ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.8E-131072IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.8991046IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.32E-131250No hitNo description
Gene3DG3DSA:3.30.50.101.1E-131350IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.61E-121550No hitNo description
PfamPF003203.5E-151650IPR000679Zinc finger, GATA-type
PROSITE patternPS0034401641IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MDDAHPSNCS DIKRRCTDCQ TTRTPCWRGG PAGPRTLCNA CGIRQRKKRR ALLGLDKGGP  60
ELSRKKMAKS SKSSKMGVSL KLDLMGFIRD GTFQEDWKRK LGEEEQAAVL LMALSCGSVC  120
SWYKKDEGKH FYPE*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0494s0210.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1482471e-147EF148247.1 Populus trichocarpa x Populus deltoides clone WS01312_C13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002302743.21e-84GATA transcription factor 16
SwissprotQ9FJ103e-31GAT16_ARATH; GATA transcription factor 16
TrEMBLB9GSF03e-83B9GSF0_POPTR; Uncharacterized protein
STRINGPOPTR_0002s20080.15e-84(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.11e-27GATA transcription factor 16
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]