|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
SapurV1A.0494s0210.1.p |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
Family |
GATA |
Protein Properties |
Length: 147aa MW: 16369.8 Da PI: 9.1804 |
Description |
GATA family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
SapurV1A.0494s0210.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GATA | 54.3 | 1.8e-17 | 28 | 62 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
C+ C+tt Tp+WR gp g++tLCnaCG+++rkk++
SapurV1A.0494s0210.1.p 28 CTDCQTTRTPCWRGGPAGPRTLCNACGIRQRKKRR 62
********************************986 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0008270 | Molecular Function | zinc ion binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 147 aa
Download sequence Send
to blast |
MDLHTKGPES EDMDDAHPSN CSDIKRRCTD CQTTRTPCWR GGPAGPRTLC NACGIRQRKK 60 RRALLGLDKG GPELSRKKMA KSSKSSKMGV SLKLDLMGFI RDGTFQEDWK RKLGEEEQAA 120 VLLMALSCGS VCSWYKKDEG KHFYPE*
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | EF148247 | 1e-163 | EF148247.1 Populus trichocarpa x Populus deltoides clone WS01312_C13 unknown mRNA. |