PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0487s0230.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 345aa    MW: 39545 Da    PI: 4.7308
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0487s0230.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM175.91.1e-54101391129
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                             +ppGfrFhPtdeelv +yL+kkv+++k++l +vi+++d+y++ePwdL +     ++e++ewyfFs++dkky+tg+r+nrat +g+Wk
  SapurV1A.0487s0230.2.p  10 VPPGFRFHPTDEELVGYYLRKKVASQKIDL-DVIRDIDLYRIEPWDLLErcwIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWK 95 
                             69****************************.9***************743543344678**************************** PP

                     NAM  85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                             atg+dk+v++ k +l+g++ktLvfykgrap+g+ktdW+mheyrle
  SapurV1A.0487s0230.2.p  96 ATGRDKAVYD-KIKLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLE 139
                             **********.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.68E-613159IPR003441NAC domain
PROSITE profilePS5100558.8110159IPR003441NAC domain
PfamPF023657.1E-2911138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MKESMDQSGV PPGFRFHPTD EELVGYYLRK KVASQKIDLD VIRDIDLYRI EPWDLLERCW  60
IGYEEQNEWY FFSHKDKKYP TGTRTNRATM AGFWKATGRD KAVYDKIKLI GMRKTLVFYK  120
GRAPNGQKTD WIMHEYRLES DENGPPQEEG WVVCRAFKKR TTGQTKSIEG WESSYFYEES  180
SGVSSVVDPI DYMARQPDHS FLAHNFLCKQ EIEGDNLSFM HSEDFVQLPQ LESPSEPLIK  240
RPTSSMFLIP ENNNSTNEEG EQNRLSNNNT QKVTDWRALD KFVASQLSQE ERYDGDGASS  300
LVGAENNSDF PLLLVQSGRD DGSTFNGFLS SSSDCDIGIC IFEK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-50316410170NO APICAL MERISTEM PROTEIN
1ut4_B1e-50316410170NO APICAL MERISTEM PROTEIN
1ut7_A1e-50316410170NO APICAL MERISTEM PROTEIN
1ut7_B1e-50316410170NO APICAL MERISTEM PROTEIN
3swm_A1e-50316413173NAC domain-containing protein 19
3swm_B1e-50316413173NAC domain-containing protein 19
3swm_C1e-50316413173NAC domain-containing protein 19
3swm_D1e-50316413173NAC domain-containing protein 19
3swp_A1e-50316413173NAC domain-containing protein 19
3swp_B1e-50316413173NAC domain-containing protein 19
3swp_C1e-50316413173NAC domain-containing protein 19
3swp_D1e-50316413173NAC domain-containing protein 19
4dul_A1e-50316410170NAC domain-containing protein 19
4dul_B1e-50316410170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0487s0230.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5999330.0AB599933.1 Populus trichocarpa PtVNS02 mRNA for transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024456751.10.0NAC domain-containing protein 37 isoform X1
SwissprotQ9SL411e-161NAC37_ARATH; NAC domain-containing protein 37
TrEMBLA0A2I4KKR20.0A0A2I4KKR2_POPTR; NAC family protein
TrEMBLB9H6Z10.0B9H6Z1_POPTR; Transcription factor
STRINGPOPTR_0005s11870.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18060.11e-161vascular related NAC-domain protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Negi S,Tak H,Ganapathi TR
    Cloning and functional characterization of MusaVND1 using transgenic banana plants.
    Transgenic Res., 2015. 24(3): p. 571-85
    [PMID:25523085]
  3. Tan TT, et al.
    Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation.
    Plant Physiol., 2018. 176(1): p. 773-789
    [PMID:29133368]