PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0483s0120.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | MYB | ||||||||
Protein Properties | Length: 1022aa MW: 114681 Da PI: 4.9768 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43 | 1e-13 | 8 | 53 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l SapurV1A.0483s0120.2.p 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 32.7 | 1.7e-10 | 60 | 103 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l SapurV1A.0483s0120.2.p 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68*****************99.********8..**********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.008 | 2 | 57 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.9E-18 | 5 | 56 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-15 | 6 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.73E-12 | 10 | 53 | No hit | No description |
Pfam | PF13921 | 4.7E-13 | 10 | 70 | No hit | No description |
SuperFamily | SSF46689 | 8.63E-21 | 33 | 106 | IPR009057 | Homeodomain-like |
CDD | cd11659 | 1.16E-30 | 55 | 106 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.4E-14 | 57 | 104 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.443 | 58 | 107 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-12 | 58 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF11831 | 3.6E-59 | 407 | 656 | IPR021786 | Pre-mRNA splicing factor component Cdc5p/Cef1 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009870 | Biological Process | defense response signaling pathway, resistance gene-dependent | ||||
GO:0010204 | Biological Process | defense response signaling pathway, resistance gene-independent | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1022 aa Download sequence Send to blast |
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACVKD DNYDPGDDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARIAN TKGKKAKRKA REKQLEEARR 180 LASLQKRREL KAAGIDNRHR KRKRRGIDYN SEIPFEKRPP PGFYDIADED RPVEQPKFPT 240 TIEELEGKKR MDIEAQLRKQ DMAKNKIAQR QDAPSAILQA NKLNDPETVR KRSKLMLPAP 300 QISDHELEDI AKMGYASDLL AGSEELTEGS GATRALLANY AQTPRQGMTP LRTPQRTPAG 360 KGDAIMMEAE NLARLRESQT PLLGGENPEL HPSDFSGVTP KKREIQTPNP MLTPSATPGS 420 VALTPRIGMT PSRDSFVMTP KGTPIRDELH INEDMDMHDS AKLEQRRQAD LRRNLLSGLG 480 NLPQPKNEYQ IVIQPPPEDN EDPEEKIEED MSDRIARAKA EEEARQQALL RKRSKVLQRE 540 LPRPPAASLE LIRESLLRAD GDKSSFVPPT SIEQADEMIR KELLALLEHD NAKYPLEEKP 600 SKEKKKGSKH PSNRSATSIP VLEDFEEDEM KQADNLIKVE AQYIRVAMGH EDESLDEFVE 660 AHKTCINDLM YFPTRNAYGL SSVAGNMEKL AALQNEFENV KTRLEAEREK ALRLEKKVNV 720 LTQGYQVRSE RQLLPPIELT LKQMDTAGTE LECFQALQRQ EQLAASHRIN GLWEEVQKQK 780 ELEQTLQRRY GDLVAELERI QQLIINYRAL AIQQEEIAAK NRTLELAEAA TKQAAMLNSE 840 TSEPVTSDEH GNSMPVGSSD KKVLEQQMDV DSENVNSALA TDTSLFNDVV PSDEGQMTLL 900 QGNGHEASGA IPSSPDGNNQ NGAPVLTEDS INRGDIVSTV GVAVKIKVND ASVDGDAGDV 960 VMRTEIMDGL ASVEGESIQE RADDFDKADV IQVSNGGDDK VNQMKDEGKL PVIDVDLTDS 1020 E* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5mqf_L | 0.0 | 2 | 801 | 3 | 799 | Cell division cycle 5-like protein |
5xjc_L | 0.0 | 2 | 801 | 3 | 799 | Cell division cycle 5-like protein |
5yzg_L | 0.0 | 2 | 801 | 3 | 799 | Cell division cycle 5-like protein |
5z56_L | 0.0 | 2 | 801 | 3 | 799 | Cell division cycle 5-like protein |
5z57_L | 0.0 | 2 | 801 | 3 | 799 | Cell division cycle 5-like protein |
5z58_L | 0.0 | 2 | 801 | 3 | 799 | Cell division cycle 5-like protein |
6ff4_L | 0.0 | 2 | 801 | 3 | 799 | Cell division cycle 5-like protein |
6ff7_L | 0.0 | 2 | 801 | 3 | 799 | Cell division cycle 5-like protein |
6icz_L | 0.0 | 2 | 801 | 3 | 799 | Cell division cycle 5-like protein |
6id0_L | 0.0 | 2 | 801 | 3 | 799 | Cell division cycle 5-like protein |
6id1_L | 0.0 | 2 | 801 | 3 | 799 | Cell division cycle 5-like protein |
6qdv_O | 0.0 | 2 | 801 | 3 | 799 | Cell division cycle 5-like protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 185 | 204 | KRRELKAAGIDNRHRKRKRR |
2 | 199 | 204 | RKRKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00028 | SELEX | Transfer from AT1G09770 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0483s0120.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002325806.2 | 0.0 | cell division cycle 5-like protein | ||||
Swissprot | P92948 | 0.0 | CDC5L_ARATH; Cell division cycle 5-like protein | ||||
TrEMBL | B9IPH8 | 0.0 | B9IPH8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0019s03520.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09770.1 | 0.0 | cell division cycle 5 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0483s0120.2.p |
Publications ? help Back to Top | |||
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