PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0483s0120.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

MYB

Protein Properties

Length: 1022aa MW: 114681 Da PI: 4.9768

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0483s0120.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43	1e-13	8	53	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l SapurV1A.0483s0120.1.p 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78***************************.**********986 PP
2	Myb_DNA-binding	32.7	1.7e-10	60	103	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l SapurV1A.0483s0120.1.p 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68***************99.****8..********9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	22.008	2	57	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.9E-18	5	56	IPR009057	Homeodomain-like
SMART	SM00717	7.0E-15	6	55	IPR001005	SANT/Myb domain
CDD	cd00167	3.73E-12	10	53	No hit	No description
Pfam	PF13921	4.7E-13	10	70	No hit	No description
SuperFamily	SSF46689	8.63E-21	33	106	IPR009057	Homeodomain-like
CDD	cd11659	1.16E-30	55	106	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.4E-14	57	104	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.443	58	107	IPR017930	Myb domain
SMART	SM00717	1.7E-12	58	105	IPR001005	SANT/Myb domain
Pfam	PF11831	3.6E-59	407	656	IPR021786	Pre-mRNA splicing factor component Cdc5p/Cef1

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009870	Biological Process	defense response signaling pathway, resistance gene-dependent
GO:0010204	Biological Process	defense response signaling pathway, resistance gene-independent
GO:0042742	Biological Process	defense response to bacterium
GO:0050832	Biological Process	defense response to fungus
GO:0009507	Cellular Component	chloroplast
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1022 aa Download sequence Send to blast
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACVKD DNYDPGDDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARIAN TKGKKAKRKA REKQLEEARR 180 LASLQKRREL KAAGIDNRHR KRKRRGIDYN SEIPFEKRPP PGFYDIADED RPVEQPKFPT 240 TIEELEGKKR MDIEAQLRKQ DMAKNKIAQR QDAPSAILQA NKLNDPETVR KRSKLMLPAP 300 QISDHELEDI AKMGYASDLL AGSEELTEGS GATRALLANY AQTPRQGMTP LRTPQRTPAG 360 KGDAIMMEAE NLARLRESQT PLLGGENPEL HPSDFSGVTP KKREIQTPNP MLTPSATPGS 420 VALTPRIGMT PSRDSFVMTP KGTPIRDELH INEDMDMHDS AKLEQRRQAD LRRNLLSGLG 480 NLPQPKNEYQ IVIQPPPEDN EDPEEKIEED MSDRIARAKA EEEARQQALL RKRSKVLQRE 540 LPRPPAASLE LIRESLLRAD GDKSSFVPPT SIEQADEMIR KELLALLEHD NAKYPLEEKP 600 SKEKKKGSKH PSNRSATSIP VLEDFEEDEM KQADNLIKVE AQYIRVAMGH EDESLDEFVE 660 AHKTCINDLM YFPTRNAYGL SSVAGNMEKL AALQNEFENV KTRLEAEREK ALRLEKKVNV 720 LTQGYQVRSE RQLLPPIELT LKQMDTAGTE LECFQALQRQ EQLAASHRIN GLWEEVQKQK 780 ELEQTLQRRY GDLVAELERI QQLIINYRAL AIQQEEIAAK NRTLELAEAA TKQAAMLNSE 840 TSEPVTSDEH GNSMPVGSSD KKVLEQQMDV DSENVNSALA TDTSLFNDVV PSDEGQMTLL 900 QGNGHEASGA IPSSPDGNNQ NGAPVLTEDS INRGDIVSTV GVAVKIKVND ASVDGDAGDV 960 VMRTEIMDGL ASVEGESIQE RADDFDKADV IQVSNGGDDK VNQMKDEGKL PVIDVDLTDS 1020 E*

Sequence ? help Back to Top

Protein Sequence Length: 1022 aa Download sequence Send to blast

MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACVKD DNYDPGDDPR  120
KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARIAN TKGKKAKRKA REKQLEEARR  180
LASLQKRREL KAAGIDNRHR KRKRRGIDYN SEIPFEKRPP PGFYDIADED RPVEQPKFPT  240
TIEELEGKKR MDIEAQLRKQ DMAKNKIAQR QDAPSAILQA NKLNDPETVR KRSKLMLPAP  300
QISDHELEDI AKMGYASDLL AGSEELTEGS GATRALLANY AQTPRQGMTP LRTPQRTPAG  360
KGDAIMMEAE NLARLRESQT PLLGGENPEL HPSDFSGVTP KKREIQTPNP MLTPSATPGS  420
VALTPRIGMT PSRDSFVMTP KGTPIRDELH INEDMDMHDS AKLEQRRQAD LRRNLLSGLG  480
NLPQPKNEYQ IVIQPPPEDN EDPEEKIEED MSDRIARAKA EEEARQQALL RKRSKVLQRE  540
LPRPPAASLE LIRESLLRAD GDKSSFVPPT SIEQADEMIR KELLALLEHD NAKYPLEEKP  600
SKEKKKGSKH PSNRSATSIP VLEDFEEDEM KQADNLIKVE AQYIRVAMGH EDESLDEFVE  660
AHKTCINDLM YFPTRNAYGL SSVAGNMEKL AALQNEFENV KTRLEAEREK ALRLEKKVNV  720
LTQGYQVRSE RQLLPPIELT LKQMDTAGTE LECFQALQRQ EQLAASHRIN GLWEEVQKQK  780
ELEQTLQRRY GDLVAELERI QQLIINYRAL AIQQEEIAAK NRTLELAEAA TKQAAMLNSE  840
TSEPVTSDEH GNSMPVGSSD KKVLEQQMDV DSENVNSALA TDTSLFNDVV PSDEGQMTLL  900
QGNGHEASGA IPSSPDGNNQ NGAPVLTEDS INRGDIVSTV GVAVKIKVND ASVDGDAGDV  960
VMRTEIMDGL ASVEGESIQE RADDFDKADV IQVSNGGDDK VNQMKDEGKL PVIDVDLTDS  1020
E*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5mqf_L	0.0	2	801	3	799	Cell division cycle 5-like protein
5xjc_L	0.0	2	801	3	799	Cell division cycle 5-like protein
5yzg_L	0.0	2	801	3	799	Cell division cycle 5-like protein
5z56_L	0.0	2	801	3	799	Cell division cycle 5-like protein
5z57_L	0.0	2	801	3	799	Cell division cycle 5-like protein
5z58_L	0.0	2	801	3	799	Cell division cycle 5-like protein
6ff4_L	0.0	2	801	3	799	Cell division cycle 5-like protein
6ff7_L	0.0	2	801	3	799	Cell division cycle 5-like protein
6icz_L	0.0	2	801	3	799	Cell division cycle 5-like protein
6id0_L	0.0	2	801	3	799	Cell division cycle 5-like protein
6id1_L	0.0	2	801	3	799	Cell division cycle 5-like protein
6qdv_O	0.0	2	801	3	799	Cell division cycle 5-like protein
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	185	204	KRRELKAAGIDNRHRKRKRR
2	199	204	RKRKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250\|UniProtKB:Q99459, ECO:0000269\|PubMed:17298883, ECO:0000269\|PubMed:17575050, ECO:0000269\|PubMed:8917598}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00028	SELEX	Transfer from AT1G09770	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0483s0120.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002325806.2	0.0	cell division cycle 5-like protein
Swissprot	P92948	0.0	CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBL	B9IPH8	0.0	B9IPH8_POPTR; Uncharacterized protein
STRING	POPTR_0019s03520.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4072	33	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09770.1	0.0	cell division cycle 5

Link Out ? help Back to Top
Phytozome	SapurV1A.0483s0120.1.p

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Li S, et al. MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis. Plant Cell, 2018. 30(2): p. 481-494 [PMID:29437988]