PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0477s0260.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 564aa    MW: 61281.3 Da    PI: 6.1624
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0477s0260.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.13.8e-09368415455
                             HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  SapurV1A.0477s0260.2.p 368 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 415
                             8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.07E-17362433IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.38E-10362419No hitNo description
PROSITE profilePS5088815.663364414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16364432IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-6368415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10370420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MESEYFFNAG VPPQALLFEQ TSTSSSMPIW QSHSSPMEMQ DNCSSHCLLN STWEKSTGHG  60
PHLESTLSSM VSSPGVANCN VSGESFIFRE LIGKLGNIGN SNNPGEISPH SQLMLAASYF  120
TAANNSANTS CYTTPLSSPP KLNMPAMDQF SKEHLNIPSL GKPMGLNSSV AEFTADPGFA  180
ERAAKFSCFG SRSFNGRISQ LGLNNAEMAK GCNPMMGNGK LPRVASSPLL KAAESQKRDR  240
SSPLQDRSDL TNSQESSVSE QIPSGEAGVK ASNELNSRKR KALSRGKTKE SASNPPVNAT  300
KDAETDENSN AKRIKPNEGE ENEIDPVKAE EEPKGSGDDS QNKANSKPPE PPKDYIHVRA  360
RRGQATDSHS LAERVRREKI SERMKLLQDL VPGCNKVTGK ALMLDEIINY VQSLQRQVEF  420
LSMKLASVNT RLDFNMDTLI SKDMFQSSQP LPHPMFPSDS SASAAIFGHQ QQPNPPLHSN  480
ISNGAATHCS MDPLDTAGLC RNLNTQLPPL DGFTENAHQY PTFCEDDLQT IVQMGFGQNP  540
SLETFPPQNF QGSNQVSHMK IEL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0477s0260.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002303073.20.0transcription factor bHLH62
TrEMBLB9GQN90.0B9GQN9_POPTR; Uncharacterized protein
STRINGPOPTR_0002s24990.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.11e-121bHLH family protein