PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0476s0200.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 360aa    MW: 39947.3 Da    PI: 4.5377
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0476s0200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.47.8e-112853251055
                             HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             r+RR+riN+++ +L+ ++P+      +K++ +++Le+Av+Y+k Lq
  SapurV1A.0476s0200.1.p 285 RKRRERINERLKTLQNIVPNG-----TKVDISTMLEEAVHYVKFLQ 325
                             9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.919275324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-14277339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-12280333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-12281330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.91E-12284329No hitNo description
PfamPF000103.2E-8285325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MNIQTMGDFP DGEWDFSRMF SMEEPDFTPE LRGQYCSFPQ DNGEGLHFTI PPDFFPTPEA  60
DVISMAGNES LFYSWNTLNP DLHFDSQESS KNSNCSSGVF LPSSSHESYF FNDSYHIQAT  120
NDNSVSMDEK TIGLFMPFPP EIAMAETACM NGDMSSDKIG DLDNNLQPAG ITAQAKGLQL  180
KRKLDDGPEP IANTLDDTKK KPRITRNSKK SVQPKKNQRS TPNIRNEEEE SNAGPDGQSS  240
SSCSSEDDNA SKDSDSKVSE KVVNSSGKTR ASRGAATDPQ SLYARKRRER INERLKTLQN  300
IVPNGTKVDI STMLEEAVHY VKFLQLQIKL LSSDDLWMYA PLAYSGIDIG LDQKLSMLL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0476s0200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002320693.20.0transcription factor bHLH85
TrEMBLA0A2K1XNY80.0A0A2K1XNY8_POPTR; Uncharacterized protein
STRINGPOPTR_0014s01730.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27740.11e-52root hair defective 6-like 4