![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.0474s0220.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 231aa MW: 26068.6 Da PI: 8.366 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 115.2 | 4.2e-36 | 16 | 113 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 aCa+Ck++r++C +dCvlapyfpae++++f++vhk+FG+snv+kl+k++++e+++++++slv+eA +r +dPv G++g +++lq++ SapurV1A.0474s0220.1.p 16 ACASCKHQRKRCGEDCVLAPYFPAERMQEFQAVHKVFGVSNVIKLVKDVKKERQKETAESLVWEATCRRNDPVLGCYGKFKRLQEEF 102 7************************************************************************************** PP DUF260 88 eqlkaelallk 98 e k + ll+ SapurV1A.0474s0220.1.p 103 ELYKMQQPLLN 113 99998876665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.499 | 15 | 116 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.6E-35 | 16 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 231 aa Download sequence Send to blast |
MHRGGDMNNR VAMHQACASC KHQRKRCGED CVLAPYFPAE RMQEFQAVHK VFGVSNVIKL 60 VKDVKKERQK ETAESLVWEA TCRRNDPVLG CYGKFKRLQE EFELYKMQQP LLNQNMLRQQ 120 QQQRVVGAVY SKQPPLVLAW NGAGGIGNRV MDGGGGGYGG HDSSDLIADS IPHNIYPWQY 180 VQGHERSNQD ASSLLLPIQP SPPPPLHPFS VNGFDHQQYY HPELVRYAPE * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-21 | 17 | 118 | 12 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-21 | 17 | 118 | 12 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.0474s0220.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC213156 | 2e-89 | AC213156.1 Populus trichocarpa clone POP076-I18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024438951.1 | 3e-98 | LOB domain-containing protein 2 | ||||
TrEMBL | A0A3N7FWJ1 | 7e-97 | A0A3N7FWJ1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0013s12770.1 | 4e-98 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12722 | 25 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G06280.1 | 1e-39 | LOB domain-containing protein 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.0474s0220.1.p |