PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0470s0060.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 376aa    MW: 43018.6 Da    PI: 6.2838
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0470s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.0005381103323
                             ET..TTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                             C+   Cgk+F +   L++H   H
  SapurV1A.0470s0060.1.p  81 CSfeGCGKTFIDAGALRKHSHIH 103
                             77779**************7766 PP
2zf-C2H216.52.5e-05108132123
                             EEET..TTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                             y+C+   Cgk F ++s LkrH   H
  SapurV1A.0470s0060.1.p 108 YVCHyeGCGKKFLDSSKLKRHFLIH 132
                             9********************8877 PP
3zf-C2H220.71.1e-06138162123
                             EEET..TTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                             + Cp   Cgk Fs   nL++H++tH
  SapurV1A.0470s0060.1.p 138 FICPheGCGKAFSLDFNLRSHMKTH 162
                             78**********************9 PP
4zf-C2H214.40.00011168192123
                             EEET..TTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                             + Cp   Cgk++ + + Lk+Hi +H
  SapurV1A.0470s0060.1.p 168 HICPhpECGKRYAHEYKLKNHIASH 192
                             679999*****************96 PP
5zf-C2H2130.00031231256123
                             EEET..TTTEEESSHHHHHHHHHH.T CS
                 zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                             y Cp   C k + + + Lk H+r+ H
  SapurV1A.0470s0060.1.p 231 YICPyeGCEKDYIHEYKLKLHLRReH 256
                             89**********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.0E-1474105IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.003779103IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.78379108IPR007087Zinc finger, C2H2
PROSITE patternPS00028081103IPR007087Zinc finger, C2H2
SuperFamilySSF576676.13E-881132No hitNo description
Gene3DG3DSA:3.30.160.602.3E-14106128IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.921108137IPR007087Zinc finger, C2H2
SMARTSM003550.0024108132IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280110132IPR007087Zinc finger, C2H2
SuperFamilySSF576671.05E-13119172No hitNo description
Gene3DG3DSA:3.30.160.606.2E-20129162IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003553.9E-4138162IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.591138167IPR007087Zinc finger, C2H2
PROSITE patternPS000280140162IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-8163194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.949168197IPR007087Zinc finger, C2H2
SMARTSM003550.053168192IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280170193IPR007087Zinc finger, C2H2
SuperFamilySSF576673.41E-5226254No hitNo description
Gene3DG3DSA:3.30.160.605.2E-9229254IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.954231264IPR007087Zinc finger, C2H2
SMARTSM003550.016231256IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280233256IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MEAHHQFTHN LFERRPIIRS KTPAVKWFKE WVPQDVVATG GKCSLFKWVT ENQLNALKEK  60
EKEPPAPEPE PEPTTEVLFL CSFEGCGKTF IDAGALRKHS HIHGERQYVC HYEGCGKKFL  120
DSSKLKRHFL IHTGERDFIC PHEGCGKAFS LDFNLRSHMK THSQENYHIC PHPECGKRYA  180
HEYKLKNHIA SHHEKNPTPE VVKYTTPPER TPKNAKTPSV VYGSASSDRP YICPYEGCEK  240
DYIHEYKLKL HLRREHPGHI GDENAENGTP NADNELDEAS DQDAYGGKRV NGKSQKQSRS  300
KPNLKMPPGK IRQQKGSSPS PATLNVVKKP WTIKDETFEE EEDSEETEEE DRDNAEDGWR  360
YGGNEDDDEE TEDED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C3e-33812524119PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0470s0060.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1485070.0EF148507.1 Populus trichocarpa x Populus deltoides clone WS0131_N16 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006385011.10.0zinc finger transcription factor YY1
SwissprotQ2V3L31e-160YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLB9N0B20.0B9N0B2_POPTR; Uncharacterized protein
STRINGPOPTR_0004s23050.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56493354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.11e-155C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]