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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0465s0200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | GATA | ||||||||
Protein Properties | Length: 186aa MW: 21149.9 Da PI: 7.4091 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 53.7 | 2.9e-17 | 118 | 150 | 1 | 33 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 C++C++ +Tp+WR gp g++tLCnaCG++y SapurV1A.0465s0200.1.p 118 CTHCQADNTPQWRIGPLGPRTLCNACGVRYSAG 150 *****************************9765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.6E-11 | 112 | 162 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 10.422 | 112 | 147 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.09E-13 | 116 | 173 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.4E-13 | 116 | 149 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.34E-14 | 117 | 166 | No hit | No description |
Pfam | PF00320 | 1.3E-14 | 118 | 148 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MVSLFLYALT FFFTTSDDVY NVSDDLDWTG SELCAPQDPI ESLDGFISAN ELSILEDFGD 60 FFGKSEEEII KTTPSRDFEL GMTKKKPRSK RRLKHGAWSM KDFELSALKN QEFPVRICTH 120 CQADNTPQWR IGPLGPRTLC NACGVRYSAG RLFPEYRPAA SPSFDQNKHS NFHKQILRRR 180 ASLLQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 84 | 93 | KKPRSKRRLK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0465s0200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024457129.1 | 6e-91 | GATA transcription factor 7 | ||||
TrEMBL | A0A3N7FUH9 | 1e-104 | A0A3N7FUH9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s06720.1 | 2e-95 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16347 | 7 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54810.2 | 2e-31 | GATA family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0465s0200.1.p |