PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0460s0060.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 558aa    MW: 61360 Da    PI: 7.5786
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0460s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.0002931123
                            EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                            ++C++C+ksF +  +L  H++tH
  SapurV1A.0460s0060.1.p  9 HVCKICKKSFLTGKMLGGHMKTH 31
                            79********************9 PP
2zf-C2H214.88.5e-0581102223
                             EETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                             +C  Cgk F ++ +L+ H+r H
  SapurV1A.0460s0060.1.p  81 TCRVCGKEFGSPKSLHGHMRHH 102
                             6*******************99 PP
3zf-C2H210.80.0016112132323
                             ETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                             C+ Cg+ F +  +L +H r+H
  SapurV1A.0460s0060.1.p 112 CEECGRGFLSLKSLSNHKRLH 132
                             ********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.4E-4532IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.07E-6536No hitNo description
SMARTSM003550.13931IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.242936IPR007087Zinc finger, C2H2
PfamPF139125.2E-7931IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.90780107IPR007087Zinc finger, C2H2
SMARTSM003550.03580102IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.600.00181104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.13E-981132No hitNo description
PfamPF139121.3E-482104IPR007087Zinc finger, C2H2
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.074110137IPR007087Zinc finger, C2H2
SMARTSM003550.2110132IPR015880Zinc finger, C2H2-like
PfamPF138940.0015111133No hitNo description
PROSITE patternPS000280112133IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.9E-4112133IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.702385412IPR007087Zinc finger, C2H2
SuperFamilySSF576672.24E-7385407No hitNo description
SMARTSM003551.2385407IPR015880Zinc finger, C2H2-like
PfamPF139129.6E-6385409IPR007087Zinc finger, C2H2
PROSITE patternPS000280387407IPR007087Zinc finger, C2H2
SuperFamilySSF576672.24E-7462489No hitNo description
PROSITE profilePS501579.058467494IPR007087Zinc finger, C2H2
SMARTSM003550.62467489IPR015880Zinc finger, C2H2-like
PfamPF139126.0E-9467490IPR007087Zinc finger, C2H2
PROSITE patternPS000280469489IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MKKNQEKEHV CKICKKSFLT GKMLGGHMKT HGARKSIKEY VKLESSNMGS ECYGLREQPK  60
KSCKFSGLNH DGSVSMQETA TCRVCGKEFG SPKSLHGHMR HHSDKERKGV NCEECGRGFL  120
SLKSLSNHKR LHHKKSGVSS SGPNPVAMAL SGTETVNLVR RKRSSRMRYK ITPTSSFSRS  180
NESVSGFDIE QEVEEAATTL IMMSRAECNG FDSLCQSKRT ERDEGSHGYD GNGLVKPKKT  240
REDYLDSCDM DYQISISGGE GDSGMGYGEA NQVRLEGLAE SFHKDVESKS PQLDGESGVE  300
FCGIEIEKGG HGEMITTNCT EAESSLDLMG GVGLDVACLG FQKSIPSNQA RIDACDAEMG  360
QDARLQMAAT TDSDITESPS KKGDFKCRIC NRNFISYQSL GGHQTFHRKS SIGVKVDSCK  420
KDSQTISSPD NKATGKLVKI EYIQEPVKQE TDGVIVKDCE SKEGKEHKCP ICFKVFLSGQ  480
ALGGHKRAHL PKTREEHNIE VNQEVSDICN AFNIKVPYTV APEGSNEVRC ESWWPGCESW  540
WPANSHKHEP LVGLIAN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0460s0060.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB9707970.0AB970797.1 Populus nigra PniZF1 mRNA for zinc-finger protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002324101.30.0uncharacterized protein LOC7467884
TrEMBLA0A2K1X5I10.0A0A2K1X5I1_POPTR; Uncharacterized protein
STRINGPOPTR_0017s12740.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133592027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67450.12e-18zinc-finger protein 1