PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0460s0050.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | MYB_related | ||||||||
Protein Properties | Length: 401aa MW: 45361.4 Da PI: 3.9499 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.4 | 1.4e-07 | 246 | 294 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 ++WT eE++ + ++v + W+ ++t++ Rt k+++s+++++ SapurV1A.0460s0050.3.p 246 NKWTDEEEQAFHEVVLSNPVSlgknFWDHLPSTFP-SRTKKELVSYYFNV 294 58*************8644444444**********.***********996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-4 | 242 | 301 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.39E-5 | 244 | 295 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.191 | 246 | 295 | IPR017877 | Myb-like domain |
CDD | cd00167 | 5.29E-6 | 247 | 295 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MCFLITFSCL HNYMPYFNLL MEFPSLLADL QYDNEGDDSF RKYQEVGRSA SDLFSECSIG 60 TSKGFETDDN GSFPHFLWTS NGILEADNLS FFPEYFDHGH QPRALLEPEE ACPSLDYPIQ 120 KQVSVGPEHQ AYVPEWDYQG SSTSLNQLDE YNLQVVRAHS SSPGVTIDGG YEENLMGTCI 180 LPMPDLEASE NYCYEATNHD CACPDAGYIR CIKQHVSEAR LKLRENLGEE IFKELGICDM 240 GEVIANKWTD EEEQAFHEVV LSNPVSLGKN FWDHLPSTFP SRTKKELVSY YFNVFMLQKR 300 ADQNRFDPLN IDSDDDEWQK NEGEAVEEDE DSAVESLTGQ DSSASCQEDH AEKCNEYVED 360 EDEDEAVASK DDVDNVVHRV ATDAEYEGDV DDFSGAHVRI * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0460s0050.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002324102.2 | 0.0 | uncharacterized protein LOC7467885 | ||||
TrEMBL | B9IK58 | 0.0 | B9IK58_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0017s12750.1 | 0.0 | (Populus trichocarpa) |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0460s0050.3.p |