PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0451s0060.5.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GRAS
Protein Properties Length: 676aa    MW: 75937.8 Da    PI: 5.6089
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0451s0060.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS388.29.4e-1193016721374
                    GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                             l++lL+ cA+av+++d + a+ lL+++++++ p+gd+mq la  f+ +L+arla+s++++ykal +++ts    +++l+a+++f  +
  SapurV1A.0451s0060.5.p 301 LRTLLTLCAQAVAADDRRSANDLLKQIRQNSPPTGDAMQSLANIFADGLEARLAGSGTQIYKALISKPTS---AADVLKAYHMFLAA 384
                             5789**************************************************************9999...9************* PP

                    GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeel 172
                             +P+ k+s++  N++I++ +e++++vHi+Df+i +G+QWp+L+q L+sRp+gpp+lRiTg++ p++g   +e++eetg+rLa++A+++
  SapurV1A.0451s0060.5.p 385 CPFRKLSNFFSNKTIMNIAENATKVHIVDFGILYGFQWPCLIQRLSSRPGGPPHLRITGIDLPNPGfrPAERVEETGRRLANYANTF 471
                             *****************************************************************9********************* PP

                    GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
                             +vpfef++ +a++++++++e+L+++++E+l+Vn+ ++l +llde+v +es+r+ vL+l+++++P+v++    +  +n++ F +rf e
  SapurV1A.0451s0060.5.p 472 KVPFEFKA-IAQKWDTIKIEDLKIDRNEVLVVNSLYRLRNLLDETVVVESPRNIVLNLIRNMNPDVFIQGVVNGAYNAPFFITRFRE 557
                             ********.7***************************************************************************** PP

                    GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346
                             al ++s+lfd lea+++re  er+ +Ere++g+e++nv+acegaer+er et+++W++++ +aGF+++pl+++++++ak  ++  + 
  SapurV1A.0451s0060.5.p 558 ALFHFSTLFDVLEANVSREVPERMLIEREIFGWEAMNVIACEGAERIERPETYKQWQMWILRAGFRQLPLNQEIYMTAKEKVEARYH 644
                             ************************************************************************************998 PP

                    GRAS 347 dgyrveeesgslvlgWkdrpLvsvSaWr 374
                             + + ++e+s++l++gWk+r ++++S+W+
  SapurV1A.0451s0060.5.p 645 KDFVIDEDSHWLLQGWKGRIVYALSSWK 672
                             88*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.092275652IPR005202Transcription factor GRAS
PfamPF035143.3E-116301672IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MIQEGDSLED FDFSDVVLKY ISKMLMEEEM EEKTCMFQES SVALLAAEKS LYELIGEKHP  60
SAPDDPVQCL DRNHERPDEN HDLNCSNYTS STSSSSSSNL VDHEWTGDLG EYKSSRHASQ  120
SSYSPGNSST SADGFVDSPV SPNMVAEIFR ESESVMQFKK GFEEASKFIP NGNLFINLES  180
KGMFLQDLKE DVNDVLAMAG VKRENYNYED GLRGKKNPYP EESTLEGSRS NKQSAVYSGS  240
TASPEDFDRV LLNCGKDVSA LQAPVHIGES KSVQKNGQAK GSNGGKARGK RQGGKKNVVD  300
LRTLLTLCAQ AVAADDRRSA NDLLKQIRQN SPPTGDAMQS LANIFADGLE ARLAGSGTQI  360
YKALISKPTS AADVLKAYHM FLAACPFRKL SNFFSNKTIM NIAENATKVH IVDFGILYGF  420
QWPCLIQRLS SRPGGPPHLR ITGIDLPNPG FRPAERVEET GRRLANYANT FKVPFEFKAI  480
AQKWDTIKIE DLKIDRNEVL VVNSLYRLRN LLDETVVVES PRNIVLNLIR NMNPDVFIQG  540
VVNGAYNAPF FITRFREALF HFSTLFDVLE ANVSREVPER MLIEREIFGW EAMNVIACEG  600
AERIERPETY KQWQMWILRA GFRQLPLNQE IYMTAKEKVE ARYHKDFVID EDSHWLLQGW  660
KGRIVYALSS WKPDC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-5230867325379Protein SCARECROW
5b3h_D1e-5230867325379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0451s0060.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024463071.10.0scarecrow-like protein 9
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A2K1ZCG10.0A0A2K1ZCG1_POPTR; Uncharacterized protein
STRINGPOPTR_0008s05750.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]