PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Cis-element |

Regulation |

Basic Information? help Back to Top

TF ID

SapurV1A.0451s0060.4.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

GRAS

Protein Properties

Length: 743aa MW: 83086.8 Da PI: 5.4021

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0451s0060.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	387.8	1.2e-118	368	739	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 l++lL+ cA+av+++d + a+ lL+++++++ p+gd+mq la f+ +L+arla+s++++ykal +++ts +++l+a+++f + SapurV1A.0451s0060.4.p 368 LRTLLTLCAQAVAADDRRSANDLLKQIRQNSPPTGDAMQSLANIFADGLEARLAGSGTQIYKALISKPTS---AADVLKAYHMFLAA 451 5789************************************************************9999...9********* PP GRAS 88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeel 172 +P+ k+s++ N++I++ +e++++vHi+Df+i +G+QWp+L+q L+sRp+gpp+lRiTg++ p++g +e++eetg+rLa++A+++ SapurV1A.0451s0060.4.p 452 CPFRKLSNFFSNKTIMNIAENATKVHIVDFGILYGFQWPCLIQRLSSRPGGPPHLRITGIDLPNPGfrPAERVEETGRRLANYANTF 538 *************************************************************9***************** PP GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259 +vpfef++ +a++++++++e+L+++++E+l+Vn+ ++l +llde+v +es+r+ vL+l+++++P+v++ + +n++ F +rf e SapurV1A.0451s0060.4.p 539 KVPFEFKA-IAQKWDTIKIEDLKIDRNEVLVVNSLYRLRNLLDETVVVESPRNIVLNLIRNMNPDVFIQGVVNGAYNAPFFITRFRE 624 ****.7************************************************************************* PP GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346 al ++s+lfd lea+++re er+ +Ere++g+e++nv+acegaer+er et+++W++++ +aGF+++pl+++++++ak ++ + SapurV1A.0451s0060.4.p 625 ALFHFSTLFDVLEANVSREVPERMLIEREIFGWEAMNVIACEGAERIERPETYKQWQMWILRAGFRQLPLNQEIYMTAKEKVEARYH 711 ********************************************************************************998 PP GRAS 347 dgyrveeesgslvlgWkdrpLvsvSaWr 374 + + ++e+s++l++gWk+r ++++S+W+ SapurV1A.0451s0060.4.p 712 KDFVIDEDSHWLLQGWKGRIVYALSSWK 739 88***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	68.092	342	719	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.2E-116	368	739	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 743 aa Download sequence Send to blast
MIMDPSLRGL YGSVNGLKLS NETQFASLDQ DLVNVLKLDS SCVNQNYVNS PLVPHDSIPS 60 SSVLSASMIQ EGDSLEDFDF SDVVLKYISK MLMEEEMEEK TCMFQESSVA LLAAEKSLYE 120 LIGEKHPSAP DDPVQCLDRN HERPDENHDL NCSNYTSSTS SSSSSNLVDH EWTGDLGEYK 180 SSRHASQSSY SPGNSSTSAD GFVDSPVSPN MVAEIFRESE SVMQFKKGFE EASKFIPNGN 240 LFINLESKGM FLQDLKEDVN DVLAMAGVKR ENYNYEDGLR GKKNPYPEES TLEGSRSNKQ 300 SAVYSGSTAS PEDFDRVLLN CGKDVSALQA PVHIGESKSV QKNGQAKGSN GGKARGKRQG 360 GKKNVVDLRT LLTLCAQAVA ADDRRSANDL LKQIRQNSPP TGDAMQSLAN IFADGLEARL 420 AGSGTQIYKA LISKPTSAAD VLKAYHMFLA ACPFRKLSNF FSNKTIMNIA ENATKVHIVD 480 FGILYGFQWP CLIQRLSSRP GGPPHLRITG IDLPNPGFRP AERVEETGRR LANYANTFKV 540 PFEFKAIAQK WDTIKIEDLK IDRNEVLVVN SLYRLRNLLD ETVVVESPRN IVLNLIRNMN 600 PDVFIQGVVN GAYNAPFFIT RFREALFHFS TLFDVLEANV SREVPERMLI EREIFGWEAM 660 NVIACEGAER IERPETYKQW QMWILRAGFR QLPLNQEIYM TAKEKVEARY HKDFVIDEDS 720 HWLLQGWKGR IVYALSSWKP DC*

Sequence ? help Back to Top

Protein Sequence Length: 743 aa Download sequence Send to blast

MIMDPSLRGL YGSVNGLKLS NETQFASLDQ DLVNVLKLDS SCVNQNYVNS PLVPHDSIPS  60
SSVLSASMIQ EGDSLEDFDF SDVVLKYISK MLMEEEMEEK TCMFQESSVA LLAAEKSLYE  120
LIGEKHPSAP DDPVQCLDRN HERPDENHDL NCSNYTSSTS SSSSSNLVDH EWTGDLGEYK  180
SSRHASQSSY SPGNSSTSAD GFVDSPVSPN MVAEIFRESE SVMQFKKGFE EASKFIPNGN  240
LFINLESKGM FLQDLKEDVN DVLAMAGVKR ENYNYEDGLR GKKNPYPEES TLEGSRSNKQ  300
SAVYSGSTAS PEDFDRVLLN CGKDVSALQA PVHIGESKSV QKNGQAKGSN GGKARGKRQG  360
GKKNVVDLRT LLTLCAQAVA ADDRRSANDL LKQIRQNSPP TGDAMQSLAN IFADGLEARL  420
AGSGTQIYKA LISKPTSAAD VLKAYHMFLA ACPFRKLSNF FSNKTIMNIA ENATKVHIVD  480
FGILYGFQWP CLIQRLSSRP GGPPHLRITG IDLPNPGFRP AERVEETGRR LANYANTFKV  540
PFEFKAIAQK WDTIKIEDLK IDRNEVLVVN SLYRLRNLLD ETVVVESPRN IVLNLIRNMN  600
PDVFIQGVVN GAYNAPFFIT RFREALFHFS TLFDVLEANV SREVPERMLI EREIFGWEAM  660
NVIACEGAER IERPETYKQW QMWILRAGFR QLPLNQEIYM TAKEKVEARY HKDFVIDEDS  720
HWLLQGWKGR IVYALSSWKP DC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	4e-52	375	740	26	380	Protein SCARECROW
5b3h_A	4e-52	375	740	25	379	Protein SCARECROW
5b3h_D	4e-52	375	740	25	379	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0451s0060.4.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024463071.1	0.0	scarecrow-like protein 9
TrEMBL	A0A2K1ZCG1	0.0	A0A2K1ZCG1_POPTR; Uncharacterized protein
STRING	POPTR_0008s05750.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	0.0	GRAS family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0451s0060.4.p