PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0446s0220.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | MYB | ||||||||
Protein Properties | Length: 994aa MW: 109612 Da PI: 4.9709 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.7 | 5.4e-18 | 40 | 86 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT++Ede+l +av+++ g++Wk+Ia+++ Rt+ qc +rwqk+l SapurV1A.0446s0220.3.p 40 KGQWTADEDEILRKAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 86 799****************************9.************986 PP | |||||||
2 | Myb_DNA-binding | 65 | 1.4e-20 | 92 | 138 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde+++++v+++G + W+tIa++++ gR +kqc++rw+++l SapurV1A.0446s0220.3.p 92 KGPWSKEEDEIIIELVNKYGAKKWSTIAQHLP-GRIGKQCRERWHNHL 138 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 46.4 | 8.9e-15 | 144 | 186 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT++E++ l++a++ +G++ W+ + ++ gRt++ +k++w+ SapurV1A.0446s0220.3.p 144 KEAWTQQEELALIHAHQIYGNR-WAELTKFLP-GRTDNAIKNHWN 186 579*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.273 | 35 | 86 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.72E-15 | 36 | 92 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.2E-15 | 39 | 88 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-15 | 40 | 86 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.9E-22 | 41 | 94 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.16E-13 | 43 | 86 | No hit | No description |
PROSITE profile | PS51294 | 33.548 | 87 | 142 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.25E-31 | 89 | 185 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-19 | 91 | 140 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.0E-19 | 92 | 138 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.75E-17 | 94 | 138 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-28 | 95 | 142 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-20 | 143 | 193 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-14 | 143 | 191 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.791 | 143 | 193 | IPR017930 | Myb domain |
Pfam | PF00249 | 7.4E-13 | 144 | 187 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.48E-11 | 146 | 186 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 994 aa Download sequence Send to blast |
MESSDSLFSA RPVDGLVSEG IPRPKLLHGR TCGPSRRSTK GQWTADEDEI LRKAVQRFKG 60 KNWKKIAECF KDRTDVQCLH RWQKVLNPEL VKGPWSKEED EIIIELVNKY GAKKWSTIAQ 120 HLPGRIGKQC RERWHNHLNP SINKEAWTQQ EELALIHAHQ IYGNRWAELT KFLPGRTDNA 180 IKNHWNSSVK KKLDSYLASG LLEQFQAFPL VGHQTLPLSS SSSRLHCTGD DNALRGGTEA 240 EDISECSQES TIVGCSQSAN DLGNAVFHTR EEFQFAEESG IRKEQSSSPV SCSEQYYIPE 300 MPCELGGSSN FLQQNFSHNT LASASSDYQF ELHELTNVSS LELRQESSAL PTHCITANES 360 HELVNVPFQT SIGPSAHTSM GNITAISEQS DQIFVSDDEC CRILFSEAAN CGIFSSGNIT 420 KQLNVVDLGG GMDSSLLQSS STQISETERS VSQSYCHPRE PDQLMVQPFG THEQQFIPSI 480 HDTFIYTNDA INSSCDDGTA NTELQEHPYL KELSKLVPVN AFPSGSDTIP SCPADKQPNV 540 LAEQQGAGGL CYEPPRFPCL DIPFLSCDLI QSGSDMQQEY SPLGIRQLMM SSMNCITPFR 600 LWDSPSRDGS PDAVLKSAAK TFTGTPSILK KRNRDLLSPL SERRDDKKLE IDMASNLSKD 660 FSRLDVMFDE SETHNRSSLL SPLSNQEKNY ESSGEDKENL DPAREGAEEN TGNSEDKVKQ 720 GTSDSDPRSK AHPDASTQTV KQSSGVPVEE NSNDLIFSPD QLGFKADRTF GPSAKTPRNF 780 YRKILSTLSE QASASESSPG NPCIIITPTV CTKKNHESHI VESTSAQPIP SSAPSENIPE 840 NFGIFGDTPF KRSIESPSAW KSPWFINSFV PGPRIDTEIS IEDIGYLMSP GDRSYDAIAL 900 MKQLSEHTAS AYADALDVLG KDTPESILKE KRLSNDPNGD IENCSHIVSN VSTECRTLDF 960 SDCGTPGKRT ENGKSSTATS FSSPSSYLLK SCR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 7e-69 | 40 | 193 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 7e-69 | 40 | 193 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00466 | DAP | Transfer from AT4G32730 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0446s0220.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024458255.1 | 0.0 | transcription factor MYB3R-1 isoform X2 | ||||
TrEMBL | A0A3N7GN88 | 0.0 | A0A3N7GN88_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s25840.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32730.2 | 0.0 | Homeodomain-like protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0446s0220.3.p |