PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0446s0220.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 999aa    MW: 110193 Da    PI: 4.9357
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0446s0220.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.75.5e-184086148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g WT++Ede+l +av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
  SapurV1A.0446s0220.2.p 40 KGQWTADEDEILRKAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 86
                            799****************************9.************986 PP
2Myb_DNA-binding651.4e-2092138148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             +g+W++eEde+++++v+++G + W+tIa++++ gR +kqc++rw+++l
  SapurV1A.0446s0220.2.p  92 KGPWSKEEDEIIIELVNKYGAKKWSTIAQHLP-GRIGKQCRERWHNHL 138
                             79******************************.*************97 PP
3Myb_DNA-binding46.49e-15144186145
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                             + +WT++E++ l++a++ +G++ W+   + ++ gRt++ +k++w+
  SapurV1A.0446s0220.2.p 144 KEAWTQQEELALIHAHQIYGNR-WAELTKFLP-GRTDNAIKNHWN 186
                             579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.2733586IPR017930Myb domain
SuperFamilySSF466891.72E-153692IPR009057Homeodomain-like
SMARTSM007176.2E-153988IPR001005SANT/Myb domain
PfamPF002491.9E-154086IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.0E-224194IPR009057Homeodomain-like
CDDcd001671.17E-134386No hitNo description
PROSITE profilePS5129433.54887142IPR017930Myb domain
SuperFamilySSF466892.25E-3189185IPR009057Homeodomain-like
SMARTSM007171.5E-1991140IPR001005SANT/Myb domain
PfamPF002496.0E-1992138IPR001005SANT/Myb domain
CDDcd001672.77E-1794138No hitNo description
Gene3DG3DSA:1.10.10.602.4E-2895142IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-20143193IPR009057Homeodomain-like
SMARTSM007171.6E-14143191IPR001005SANT/Myb domain
PROSITE profilePS5129418.791143193IPR017930Myb domain
PfamPF002497.5E-13144187IPR001005SANT/Myb domain
CDDcd001674.51E-11146186No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 999 aa     Download sequence    Send to blast
MESSDSLFSA RPVDGLVSEG IPRPKLLHGR TCGPSRRSTK GQWTADEDEI LRKAVQRFKG  60
KNWKKIAECF KDRTDVQCLH RWQKVLNPEL VKGPWSKEED EIIIELVNKY GAKKWSTIAQ  120
HLPGRIGKQC RERWHNHLNP SINKEAWTQQ EELALIHAHQ IYGNRWAELT KFLPGRTDNA  180
IKNHWNSSVK KKLDSYLASG LLEQFQAFPL VGHQTLPLSS SSSRLHCTGD DNALRGGTEA  240
EDISECSQES TIVGCSQSAN DLGNAVFHTR EEFQFAEESG IRKEQSSSPV SCSEQYYIPE  300
MPCELGGSSN FLQQNFSHNT LASASSDYQF ELHELTNVSS LELRQESSAL PTHCITANES  360
HELVNVPFQT SIGPSAHTSM GNITAISEQS DQIFVSDDEC CRILFSEAAN CGIFSSGNIT  420
KQLNVVDLGG GMDSSLLQSS STQISETERS VSQSYCHPRS AVLGASCSQS FLPGPSLYST  480
DNSTPLVYDR EPDQLMVQPF GTHEQQFIPS IHDTFIYTND AINSSCDDGT ANTELQEHPY  540
LKELSKLVPV NAFPSGSDTI PSCPADKQPN VLAEQQGAGG LCYEPPRFPC LDIPFLSCDL  600
IQSGSDMQQE YSPLGIRQLM MSSMNCITPF RLWDSPSRDG SPDAVLKSAA KTFTGTPSIL  660
KKRNRDLLSP LSERRDDKKL EIDMASNLSK DFSRLDVMFD ESETHNRSSL LSPLSNQEKN  720
YESSGEDKEN LDPAREGAEE NTGNSEDKVK QGTSDSDPRS KAHPDASTQT VKQSSGVPVE  780
ENSNDLIFSP DQLGFKADRT FGPSAKTPRN FYRKILSTLS EQASASESSP GNPCIIITPT  840
VCTKKNHESH IVESTSAQPI PSSAPSENIP ENFGIFGDTP FKRSIESPSA WKSPWFINSF  900
VPGPRIDTEI SIEDIGYLMS PGDRSYDAIA LMKQLSEHTA SAYADALDVL GKDTPESILK  960
EKRLSNDPNG DIENCSHIVS NVSLKRLFGT RADRMPDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C4e-69401936159MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-69401936159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00466DAPTransfer from AT4G32730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0446s0220.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002309557.20.0transcription factor MYB3R-1 isoform X1
TrEMBLA0A3N7GN880.0A0A3N7GN88_POPTR; Uncharacterized protein
STRINGPOPTR_0006s25840.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.20.0Homeodomain-like protein