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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0446s0220.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | MYB | ||||||||
Protein Properties | Length: 1025aa MW: 112827 Da PI: 4.9437 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.7 | 5.6e-18 | 40 | 86 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT++Ede+l +av+++ g++Wk+Ia+++ Rt+ qc +rwqk+l SapurV1A.0446s0220.1.p 40 KGQWTADEDEILRKAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 86 799****************************9.************986 PP | |||||||
2 | Myb_DNA-binding | 65 | 1.5e-20 | 92 | 138 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde+++++v+++G + W+tIa++++ gR +kqc++rw+++l SapurV1A.0446s0220.1.p 92 KGPWSKEEDEIIIELVNKYGAKKWSTIAQHLP-GRIGKQCRERWHNHL 138 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 46.4 | 9.2e-15 | 144 | 186 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT++E++ l++a++ +G++ W+ + ++ gRt++ +k++w+ SapurV1A.0446s0220.1.p 144 KEAWTQQEELALIHAHQIYGNR-WAELTKFLP-GRTDNAIKNHWN 186 579*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.273 | 35 | 86 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.79E-15 | 36 | 92 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.2E-15 | 39 | 88 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-15 | 40 | 86 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.3E-22 | 41 | 94 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.21E-13 | 43 | 86 | No hit | No description |
PROSITE profile | PS51294 | 33.548 | 87 | 142 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.32E-31 | 89 | 185 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-19 | 91 | 140 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.2E-19 | 92 | 138 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.88E-17 | 94 | 138 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-28 | 95 | 142 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.8E-20 | 143 | 193 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-14 | 143 | 191 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.791 | 143 | 193 | IPR017930 | Myb domain |
Pfam | PF00249 | 7.7E-13 | 144 | 187 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.66E-11 | 146 | 186 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 1025 aa Download sequence Send to blast |
MESSDSLFSA RPVDGLVSEG IPRPKLLHGR TCGPSRRSTK GQWTADEDEI LRKAVQRFKG 60 KNWKKIAECF KDRTDVQCLH RWQKVLNPEL VKGPWSKEED EIIIELVNKY GAKKWSTIAQ 120 HLPGRIGKQC RERWHNHLNP SINKEAWTQQ EELALIHAHQ IYGNRWAELT KFLPGRTDNA 180 IKNHWNSSVK KKLDSYLASG LLEQFQAFPL VGHQTLPLSS SSSRLHCTGD DNALRGGTEA 240 EDISECSQES TIVGCSQSAN DLGNAVFHTR EEFQFAEESG IRKEQSSSPV SCSEQYYIPE 300 MPCELGGSSN FLQQNFSHNT LASASSDYQF ELHELTNVSS LELRQESSAL PTHCITANES 360 HELVNVPFQT SIGPSAHTSM GNITAISEQS DQIFVSDDEC CRILFSEAAN CGIFSSGNIT 420 KQLNVVDLGG GMDSSLLQSS STQISETERS VSQSYCHPRS AVLGASCSQS FLPGPSLYST 480 DNSTPLVYDR EPDQLMVQPF GTHEQQFIPS IHDTFIYTND AINSSCDDGT ANTELQEHPY 540 LKELSKLVPV NAFPSGSDTI PSCPADKQPN VLAEQQGAGG LCYEPPRFPC LDIPFLSCDL 600 IQSGSDMQQE YSPLGIRQLM MSSMNCITPF RLWDSPSRDG SPDAVLKSAA KTFTGTPSIL 660 KKRNRDLLSP LSERRDDKKL EIDMASNLSK DFSRLDVMFD ESETHNRSSL LSPLSNQEKN 720 YESSGEDKEN LDPAREGAEE NTGNSEDKVK QGTSDSDPRS KAHPDASTQT VKQSSGVPVE 780 ENSNDLIFSP DQLGFKADRT FGPSAKTPRN FYRKILSTLS EQASASESSP GNPCIIITPT 840 VCTKKNHESH IVESTSAQPI PSSAPSENIP ENFGIFGDTP FKRSIESPSA WKSPWFINSF 900 VPGPRIDTEI SIEDIGYLMS PGDRSYDAIA LMKQLSEHTA SAYADALDVL GKDTPESILK 960 EKRLSNDPNG DIENCSHIVS NVSTECRTLD FSDCGTPGKR TENGKSSTAT SFSSPSSYLL 1020 KSCR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 3e-69 | 40 | 193 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 3e-69 | 40 | 193 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00466 | DAP | Transfer from AT4G32730 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0446s0220.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002309557.2 | 0.0 | transcription factor MYB3R-1 isoform X1 | ||||
TrEMBL | A0A3N7GN88 | 0.0 | A0A3N7GN88_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s25840.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3727 | 33 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32730.2 | 0.0 | Homeodomain-like protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0446s0220.1.p |