PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0445s0160.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Trihelix
Protein Properties Length: 457aa    MW: 51142 Da    PI: 5.913
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0445s0160.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix667.9e-21123219185
                trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tses 75 
                             +Wt++ v++Li+++  ++++   ++           +kk++W+ vsk m ++g+++sp+qC++k+++lnkryk+++e+ +++ ++++
  SapurV1A.0445s0160.1.p 123 KWTDNIVRLLIAVVACVGDDGTLDAveglkrksgllQKKGKWKMVSKLMISKGCHVSPQQCEDKFNDLNKRYKRLNEILGRGtSCRV 209
                             7**************666666644333455556788**********************************************56999 PP

                trihelix  76 sstcpyfdql 85 
                             +++ ++ d++
  SapurV1A.0445s0160.1.p 210 VENPVLMDSM 219
                             9998888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.9E-18121246No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MDNSGLGGRF LSGPSGGLLD LESPIHRHQQ SQLGHPSLAH QHQVNIVGCF DNDHQPIGLT  60
EVKGSTSKVY SANFGKGKAV SPFNCASSGN ASEDDDQSFM EDGNGENSTG VKGKKGSPWQ  120
RMKWTDNIVR LLIAVVACVG DDGTLDAVEG LKRKSGLLQK KGKWKMVSKL MISKGCHVSP  180
QQCEDKFNDL NKRYKRLNEI LGRGTSCRVV ENPVLMDSMP HLSAKAKDDV RKILGSKHLF  240
YKEMCAYHNG QRIPNCQDLD LHGCSLPLER CSKDNNGSGE DEAEGNGDSD DDESDNEENN  300
NGDEDGDRER VGHLCEGQVN DEHAHLWSQP GGRNSFDVEM AEIFQDPAVS PWERKEWIKK  360
QMLQLLEQRV SIQAQAFELE KQRFKWLRYC SKKDKEFERS RLENERRKLE NEQSALQLRQ  420
KQLEMDFKSS EPSFDPACLG IDGLQGRDPI DLSRPQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0445s0160.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2164130.0AC216413.1 Populus trichocarpa clone POP035-J17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024451426.10.0uncharacterized protein LOC7487031
TrEMBLA0A2K2BR190.0A0A2K2BR19_POPTR; Uncharacterized protein
STRINGPOPTR_0001s05670.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105463240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.17e-66sequence-specific DNA binding transcription factors