PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

C2H2

Protein Properties

Length: 328aa MW: 37076.2 Da PI: 7.527

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0445s0140.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.8	0.00037	166	185	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C k+F+r n++ H+ SapurV1A.0445s0140.1.p 166 FSCSLCFKTFNRYNNMQMHM 185 89*****************9 PP
2	zf-C2H2	15.5	5e-05	250	272	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++Cgk F k + ++H +++ SapurV1A.0445s0140.1.p 250 FMCTKCGKAFAVKGDWRTHEKNC 272 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	2.2E-4	166	185	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	9.785	166	193	IPR007087	Zinc finger, C2H2
SMART	SM00355	1.9	166	188	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	168	188	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	6.46E-7	235	270	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.2E-6	246	270	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	40	250	270	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.891	250	270	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MADPYSKHLN GRYSFNHLHH LSASASSSNS SVLYASYGCN MYSDNNSNSF IQSQLYSSSP 60 PSPPLIEALP LLTFSPTRHH EDQQECFSFS SMEVDKNRDK EESLYDDKTV LHLGLPSSLD 120 SADLVSSTEN EEVTVVSDYQ TSSSNLNKGQ YWIPTPSQIL ISPTQFSCSL CFKTFNRYNN 180 MQMHMWGHGS QYRKGPDSLR GTQPTAMLRL PCYCCAAGCT NNIDHPRAKP LRDFRTLQTH 240 YKRKHGIKPF MCTKCGKAFA VKGDWRTHEK NCGKLWYCIC GSYFKHKRSL NDHIKSYGYG 300 HSENGTGFFE EDDEPASETE QNNKAIQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator. {ECO:0000305\|PubMed:20541552}.
UniProt	Probable transcriptional regulator. {ECO:0000305\|PubMed:20541552}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0445s0140.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011037986.1	1e-177	PREDICTED: zinc finger protein WIP2-like
Swissprot	Q8W030	1e-118	ZWIP4_ARATH; Zinc finger protein WIP4
Swissprot	Q8W031	1e-118	ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBL	B9GWA1	1e-163	B9GWA1_POPTR; Uncharacterized protein
STRING	POPTR_0003s20400.1	1e-164	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF170	34	289

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-117	C2H2 family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0445s0140.1.p

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610]