PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0442s0220.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 714aa    MW: 76834.1 Da    PI: 6.3722
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0442s0220.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.73.2e-16449495455
                             HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              hn  ErrRRdriN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  SapurV1A.0442s0220.1.p 449 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 495
                             6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.31E-20442507IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.349445494IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.55E-17448499No hitNo description
PfamPF000101.3E-13449495IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-20449503IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-17451500IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    Send to blast
MPLSELLYRM AEGKTDSSQE KNPGCSTDLS FVPENDFGEL IWENGQIQSS RARKIQTRNS  60
LPPKIRDKDI GNGTNTKTGK FGTTESALNE FLAVPAVEMR ANQGDDMVPW LNYSLDESLQ  120
HDYCSEFLPE LSGVTVNEHS SQSNFPSYDR RSCNQLITDS HIVSVHNGLS LEQGDVVMNS  180
SAGDIEANRP RTSASQLYPS SSEQCKPSFP FFRCRDSTKN DDSTTNAVHH VIAPDSIPAP  240
TSGGGFPSIK MQKQVPAPSP INSSLMNFSH FARPAVLVKA NLQNVGMRTS SGISTMERLK  300
NKDKGSIGLS KETGSRCRPT MMSSKVEIKP TEVKSAEGSV PAELAEAMSQ EGDSKSNRNC  360
HQNFGESAVK GLADVEKTTE PLVASSSVGS GNSAERPTDD LTENLKRKHR DTEESEGPSE  420
DVEEESVGAK KPASARAGNG SKRGRAAEVH NLSERRRRDR INEKMRALQE LIPNCNKVDK  480
ASMLDEAIEY LKTLQLQVQI MSMGAGMYMP SMIFPPGMPH MHAAHMGQFL PMGVGMGMGF  540
RMGMPDMNSG SSGCPMYQVP PMHGAHFPGS PVPRPSALHG MGGHSLQMPG LSGQGLPMSF  600
PRAPLMPMPG GPPSKTNREP NACGVVGPMD NLDSATASNS KDAIKNINSQ VMKNNVANRS  660
MNQTSSQCQA TNECFEQPAF VQNNGEDSEG AENGVLKSAG GTDIVPCRAT GCD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1453458ERRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0442s0220.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2145960.0AC214596.1 Populus trichocarpa clone POP018-C13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024438998.10.0transcription factor PIF3 isoform X4
TrEMBLB9I6B90.0B9I6B9_POPTR; Uncharacterized protein
STRINGPOPTR_0013s00310.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52713353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.24e-56phytochrome interacting factor 3