PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0441s0120.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 385aa    MW: 42225.1 Da    PI: 7.1021
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0441s0120.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.14.2e-052893261254
                             HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                             R +++ ++++ L++l+ +      +K + a++L++A+ YI+ L
  SapurV1A.0441s0120.1.p 289 RKEKLGDRIAALQRLVAPY-----GKTDTASVLTEAIGYIQFL 326
                             7788899*********999.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.249277326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-8287334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.9E-11287339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.01E-5287331No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MEPGNLHLQH QFQEQFTGYS SLLSQPADFN KVSSTGDLNP GTGFILNINS NSSSNYLTDC  60
IPNSRVSWPL DSLTPGLSFC HASGFTQPST ANEFLLAKTK DELPDPFFKP GEMMHTGSNV  120
EEPDFLSSKY KHQYSHDLGG NQWPLNSLSS LHHISDTNSQ NTASLQNLSG CNRYNFSQIL  180
PSINISTSDL CSSLVSSSLD LNLQAVDLLS ASTYDGAASF SQSSQNTLDH FMREHKDSPS  240
KSCNKTSTFE DGFGRKKRPS SIFQSKNFLT EAKKNRSTPR SLCPPLKVRK EKLGDRIAAL  300
QRLVAPYGKT DTASVLTEAI GYIQFLHDQV QKLSVPNIKP TITTHVCSNE EDGMGQQKKD  360
LRSRGLCLVP VSCVSFFNTC SGDN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0441s0120.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024461607.10.0transcription factor bHLH110 isoform X1
TrEMBLA0A3N7F9420.0A0A3N7F942_POPTR; Uncharacterized protein
STRINGPOPTR_0007s13360.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40453254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.14e-38bHLH family protein