PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0438s0100.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 423aa    MW: 47036.5 Da    PI: 8.184
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0438s0100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.21.5e-16126171147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             +g W + Ed +l+++v+++G+ +W+ Ia++++ gR++k+c++rw++ 
  SapurV1A.0438s0100.1.p 126 KGHWRPAEDSKLKELVALHGPQNWNHIAEKLQ-GRSGKSCRLRWFNQ 171
                             689*****************************.***********996 PP
2Myb_DNA-binding45.22.2e-14180222347
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             ++ ++E+e+l  a++ +G++ W++Iar +  gRt++ +k++w+ +
  SapurV1A.0438s0100.1.p 180 AFNEDEEERLMAAHRVYGNK-WALIARFFT-GRTDNAVKNHWHVV 222
                             6899****************.********9.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.802121176IPR017930Myb domain
SMARTSM007171.1E-14125174IPR001005SANT/Myb domain
SuperFamilySSF466891.42E-26126223IPR009057Homeodomain-like
PfamPF002492.7E-16126171IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-25127179IPR009057Homeodomain-like
CDDcd001675.94E-13129170No hitNo description
PROSITE profilePS5129418.447177227IPR017930Myb domain
SMARTSM007171.3E-11177225IPR001005SANT/Myb domain
CDDcd001673.72E-9180223No hitNo description
Gene3DG3DSA:1.10.10.601.5E-17180226IPR009057Homeodomain-like
PfamPF002491.8E-11180221IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MEMTLHQFHS IACCHHENDG IPSHYTTSTS TPRNSSAIET FHDMGSLPLV PDSRMRLNIC  60
SSVCSYKGRR DFALEGKCCS NRLENHQWSE EVGDAGEKQK HKAERMENTE DIAEIMEVRG  120
SKICNKGHWR PAEDSKLKEL VALHGPQNWN HIAEKLQGRS GKSCRLRWFN QLDPKINSTA  180
FNEDEEERLM AAHRVYGNKW ALIARFFTGR TDNAVKNHWH VVMARKYREQ SCIYKKRKRT  240
QAVQRRGDNA GDSLIGNTVK NTDPSSNIIC SSRIIKPSSL PFSPPIGGSN SAYGKMTAGL  300
LISRSHHGSL AEETPSFFSG HQMRYKMLRD SDTCTVFDAM QQSSSRRFPG FSDSMASSAT  360
QATASEPSSS SLSAAENTEA SSSEITTTSP PFIDFLGVGA TESARVSEAC NMYLRSNSVA  420
YE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-291262267107B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1234239KKRKRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0438s0100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011035778.10.0PREDICTED: myb-like DNA-binding protein myb-1 isoform X2
TrEMBLB9IJZ80.0B9IJZ8_POPTR; Uncharacterized protein
STRINGPOPTR_0017s12140.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2807933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.12e-65myb domain protein 105