PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0438s0020.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

NAC

Protein Properties

Length: 348aa MW: 39433.4 Da PI: 6.5849

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0438s0020.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	174.1	4.2e-54	16	142	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 lppGfrFhPtdeel+++yL +kv ++ + + ++i evd++k+ePwdLp ++k +ekewyfF+ d+ky+tg +nrat++gyWkatg SapurV1A.0438s0020.1.p 16 LPPGFRFHPTDEELITHYLSQKVLDNYFCA-RAIGEVDLNKCEPWDLPWRAKMGEKEWYFFCVIDRKYPTGLWTNRATDAGYWKATG 101 79***********************988.89***********888999***************************** PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 kdke+++ ++lvglkktLvfykgrapkgekt+Wvmheyrle SapurV1A.0438s0020.1.p 102 KDKEIFK-AKTLVGLKKTLVFYKGRAPKGEKTNWVMHEYRLE 142 ***.999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.35E-61	9	166	IPR003441	NAC domain
PROSITE profile	PS51005	57.064	16	166	IPR003441	NAC domain
Pfam	PF02365	5.4E-29	17	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MENNSMYSEE DEQMELPPGF RFHPTDEELI THYLSQKVLD NYFCARAIGE VDLNKCEPWD 60 LPWRAKMGEK EWYFFCVIDR KYPTGLWTNR ATDAGYWKAT GKDKEIFKAK TLVGLKKTLV 120 FYKGRAPKGE KTNWVMHEYR LEGKTPVYNH PKTGKNDWVI CRIFEKSSGG KKTHISGLVR 180 LSSYGNELKP SLLPPLMDSS QLNSDKRTNI GDNSHVTCFS NPMEDHKPHE TIADSFNSFR 240 GAPLSCSSMS PSSVLSSKPS PPNSFYSPQI LPNIASFLYP DSAMMPEHPS MSRILLENLN 300 SKRELSEDTG LSTGMSSVVS DHELVHRSFE DPSSSAGQVD LDYLWNY*

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MENNSMYSEE DEQMELPPGF RFHPTDEELI THYLSQKVLD NYFCARAIGE VDLNKCEPWD  60
LPWRAKMGEK EWYFFCVIDR KYPTGLWTNR ATDAGYWKAT GKDKEIFKAK TLVGLKKTLV  120
FYKGRAPKGE KTNWVMHEYR LEGKTPVYNH PKTGKNDWVI CRIFEKSSGG KKTHISGLVR  180
LSSYGNELKP SLLPPLMDSS QLNSDKRTNI GDNSHVTCFS NPMEDHKPHE TIADSFNSFR  240
GAPLSCSSMS PSSVLSSKPS PPNSFYSPQI LPNIASFLYP DSAMMPEHPS MSRILLENLN  300
SKRELSEDTG LSTGMSSVVS DHELVHRSFE DPSSSAGQVD LDYLWNY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-54	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-54	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-54	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-54	13	172	14	171	NO APICAL MERISTEM PROTEIN
4dul_A	2e-54	13	172	14	171	NAC domain-containing protein 19
4dul_B	2e-54	13	172	14	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0438s0020.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024444214.1	0.0	NAC domain-containing protein 100
Swissprot	Q9FLJ2	1e-125	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A2K1X569	0.0	A0A2K1X569_POPTR; Uncharacterized protein
STRING	POPTR_0017s12210.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-125	NAC domain containing protein 100

Link Out ? help Back to Top
Phytozome	SapurV1A.0438s0020.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]