PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0435s0090.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Trihelix
Protein Properties Length: 588aa    MW: 66913.3 Da    PI: 6.0567
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0435s0090.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix96.72.1e-30401485186
                trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                             rW+k+ev aLie+r+++e ++++   k+plWeevs+ m++ g++rs+k+Ckekwen+nk+++k ke+ ++r s++s+tc+yf+ql+
  SapurV1A.0435s0090.1.p 401 RWPKDEVEALIEVRSRIEIKFQEPGVKGPLWEEVSSLMSSMGYQRSAKRCKEKWENINKYFRKAKESPERR-SQRSKTCSYFNQLD 485
                             8********************************************************************98.88999********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.503394458IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.608.3E-4399457IPR009057Homeodomain-like
PfamPF138377.7E-21400487No hitNo description
CDDcd122033.55E-25400465No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    Send to blast
MQPSNGGLSN IQPHHQQRQQ HLMEDDCCCS PSVVLPISNL ENLNHPYLPH QVFLQQHHQL  60
FYPFQQQLSQ GHGTPQNPSL FTMNFKLGGN EGSGNKKASA LNNQLEAAAS PALLDGNGHI  120
NPPHAILMPH SWHPQEESTT IKEPFRKQLE SKRWESEEEE ISGNKTRYFR PSEIQHLVDE  180
SREGCRDLDS KFPIFNELEA IYSLARIAEA NQTGSGSVLT GDHSPNNAGL SVPYSATNWQ  240
NVDANGAANH VTRVDHGSDN SIGEQASLRK SQKRKRKRKL KEKLSYMVGF FENTVKKVMD  300
HQEMLHRKFL EVIERMDRER TEREETWRHQ EAEKFNREAT SIAHERASTS SREAQIVSYI  360
EKITGQCINL PIIMTPPLLQ PGISNEPIKE ITSTKSDSHS RWPKDEVEAL IEVRSRIEIK  420
FQEPGVKGPL WEEVSSLMSS MGYQRSAKRC KEKWENINKY FRKAKESPER RSQRSKTCSY  480
FNQLDQLYTR SPMNYSCNTT YMPSRGIEFD IDNQGYSEVV EALALGKDHL ATITNPPGEN  540
IKGAEMGSSR FEFDGIADEN EELEEGSTEL DKEVYEDDRQ ENGEQGT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1272278KRKRKRK
2272279KRKRKRKL
3273278RKRKRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00651PBMTransfer from LOC_Os02g01380Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0435s0090.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002324189.30.0uncharacterized protein LOC7476669
TrEMBLB9HD130.0B9HD13_POPTR; Uncharacterized protein
STRINGPOPTR_0018s05520.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF139981421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.25e-43Trihelix family protein