PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0430s0060.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GRAS
Protein Properties Length: 1260aa    MW: 144339 Da    PI: 6.0818
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0430s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS169.52.6e-5213416374
                    GRAS   6 lecAeavssgdlelaqalLarlselaspdg..dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                             +ecA+a++ g+l  a++lL+ ++ +as++    +++ +++yf+eAL +r+++      + l p +        ++ + ++ +   P+
  SapurV1A.0430s0060.1.p   1 MECAKAIEGGNLDVADSLLESIQSQASQESclVSTRLVVKYFAEALVRRVYG-----IRPLCPLRL------ATFLFEQVEYMFIPF 76 
                             69***********************99999766999999*************.....333322222......2344556667889** PP

                    GRAS  91 lkfshltaNqaIleave.geervHiiDfdisqG.lQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvp 175
                             l+f++ ++  aI +a++ g++r+HiiD++i+     W   ++ L  R +g  s+ iT v +     k++  + g+r     +  gv+
  SapurV1A.0430s0060.1.p  77 LEFAQTATEDAICDALNpGNKRLHIIDLSIMSRiSRWTVVINRLKVRYGGLQSVLITSVTP-----KRSS-QEGDR-----KVGGVD 152
                             ****************8567**********875269************************9.....3333.33444.....34589* PP

                    GRAS 176 fefnvlvakrledl..eleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
                             +e++ l+ k+ +d+   +++L+ k+ + +++Vn+ + l +ll++++++e+    vL+ vk+l+++++v++eqea+++s ++ +r+++
  SapurV1A.0430s0060.1.p 153 LEWRQLIYKSPDDIvkCFSRLSRKRkDGMVVVNWGFILGKLLAQDGAIEQ----VLSKVKDLEADIMVISEQEANLTSLDLSNRLTQ 235
                             ***99988877766455789988887889********************9....********************************* PP

                    GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346
                             +l yys++f+sle       ++  +  + +++r+i nvvaceg +r+e  e++ +W++rl++aGF+p+pl+    +     l+  k 
  SapurV1A.0430s0060.1.p 236 SLLYYSTVFESLELD-----DDTFMSRETYFRRQIGNVVACEGIDRVEWIESFDQWQHRLSQAGFSPIPLQAARFN--YGFLNALK- 314
                             *************99.....6666666778****************************************764443..34555555. PP

                    GRAS 347 dgyrveeesgslvlgWkdrpLvsvSaWr 374
                              g+r+e ++  + l W + pL ++S+W+
  SapurV1A.0430s0060.1.p 315 -GFRIELKDVHIQLSWGGFPLAVASVWK 341
                             .9*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098527.0971325IPR005202Transcription factor GRAS
PfamPF035149.0E-501341IPR005202Transcription factor GRAS
SMARTSM006143.5E-9685736IPR003656Zinc finger, BED-type
PROSITE profilePS5080810.632685741IPR003656Zinc finger, BED-type
SuperFamilySSF576675.71E-7688741No hitNo description
SuperFamilySSF530983.03E-498241256IPR012337Ribonuclease H-like domain
PfamPF143726.9E-1810541145IPR025525hAT-like transposase, RNase-H fold
PfamPF056992.6E-1511761255IPR008906HAT, C-terminal dimerisation domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1260 aa     Download sequence    Send to blast
MECAKAIEGG NLDVADSLLE SIQSQASQES CLVSTRLVVK YFAEALVRRV YGIRPLCPLR  60
LATFLFEQVE YMFIPFLEFA QTATEDAICD ALNPGNKRLH IIDLSIMSRI SRWTVVINRL  120
KVRYGGLQSV LITSVTPKRS SQEGDRKVGG VDLEWRQLIY KSPDDIVKCF SRLSRKRKDG  180
MVVVNWGFIL GKLLAQDGAI EQVLSKVKDL EADIMVISEQ EANLTSLDLS NRLTQSLLYY  240
STVFESLELD DDTFMSRETY FRRQIGNVVA CEGIDRVEWI ESFDQWQHRL SQAGFSPIPL  300
QAARFNYGFL NALKGFRIEL KDVHIQLSWG GFPLAVASVW KLTDPPQSGS GLCVMQDKDD  360
DPEEMASSSE SEDDEENDPR IMEDRNLWRT QGSSMNRIAA SAKLFDILEY ICNLYKLPVA  420
VTWISYNRGG NTNSNEKRIL CIDYSACYTL TLSMDEYMVG YAHHHLEEGQ GVAGKALQSN  480
FHIQHDVYKP NPADFFDSNN ESNWQNKSLR ASFAIRLTST HSCKDDYVLE FFLPKHMEHT  540
SERLISKVLC TLQKNCLESW KIWVTEQNEA SRSGVRLDGE RMSSIPHEVV SSILQLPSSN  600
GGNEFITTST QAGETHEPLE QDVQKQSDIA TPALNDENAS LITDGGLQST NKRRKKQSAI  660
VAPARNDENA SLTVEGGLQS TNKRKKISSV WDNFNEHHEK NGEVWATCKH CTKMYRAESK  720
RGTTNLHKHL RKCLPSRQDE AEQQPLIFET GGSSTNIIQR NSIINQKRSR LDIETMIINH  780
GYPLDMVQHE FFKIFVKNLQ PMFELHSKDD VEANVLAICR QEKEKLIKYF DSLSCLLSLT  840
LELWSSNDKM MTYCCLTVHF IDDEWQLKKK ILAFRNLRYN YDMGTVHEFI KSVLADWRIN  900
KNVHFILLDI TPPKEHMIGE LRRLVSDKAP LVHGHLFCVS SYAQILSLLV QDGFSEIRSL  960
LYKIRECIEY VNGSSLGRQR FQEAINKGSL QDKEMPFQDV PARWDTTFLM LESSLEFREA  1020
FNHLEQLDRD FKVNQSTEEW NKATSICECL KELHNYLLSI RDVYKNLLKW KQREHVYVRS  1080
KANKMKGKFD EYWGEASLAL GISVVLNPSF KLKLVKYGYQ QIYGSEYNLH FSKFLDNVTD  1140
VYKKYDEGPS SYAMVEESLC PSSDISFEEW HSQQNELDQY LEQPLEKLDK DGNILAWWQE  1200
NAQKFPILGK MARDFLAIPV STVISKSSEV MKMTSVHDGV HPEIAEALIC GKDWLDSRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1513419375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0430s0060.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024443927.10.0uncharacterized protein LOC112324561
TrEMBLA0A3N7G5D10.0A0A3N7G5D1_POPTR; Uncharacterized protein
STRINGPOPTR_0016s02730.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1556826
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.14e-48GRAS family protein