PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0429s0060.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family M-type_MADS
Protein Properties Length: 174aa    MW: 19679.9 Da    PI: 4.7033
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0429s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.22.8e-15251149
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHH.T-EEEEEEE-TTSEEEEE CS
                  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLC.daevaviifsstgklyey 49
                            k+ie+k    vtf+kRrng++KKA+E + L  d++ avi++s++++ y +
  SapurV1A.0429s0060.1.p  2 KKIESKNSLIVTFCKRRNGLFKKASEFCNLYdDVNLAVIVLSPNQRPYSF 51
                            689***************************736***********998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554556.41E-17175IPR002100Transcription factor, MADS-box
SMARTSM004322.2E-11154IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.143155IPR002100Transcription factor, MADS-box
PfamPF003196.6E-19351IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MKKIESKNSL IVTFCKRRNG LFKKASEFCN LYDDVNLAVI VLSPNQRPYS FGHPDVNTVV  60
DQYLGDEESS ERNNISPSVQ VSWQGGSPDL TKVTSSKLGL SLENTHGKND MDCDNINEEG  120
EGLWWERSVE DMDFEELEKF KASSETLKNN VVMRVREDSR TRVSTRDFLG VFS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0429s0060.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1495755e-93AC149575.1 Populus trichocarpa clone Pop1-41G18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006383903.14e-80agamous-like MADS-box protein AGL62
TrEMBLU5GE238e-79U5GE23_POPTR; Uncharacterized protein
STRINGPOPTR_0004s01080.11e-79(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-24AGAMOUS-like 61