PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0428s0090.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | LBD | ||||||||
Protein Properties | Length: 285aa MW: 31580.6 Da PI: 6.0269 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 136.7 | 8.2e-43 | 7 | 106 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +CaaCk+lrrkC+++Cv+apyfp +qp+kfa vhk+FGasnv kll++l+ +reda++sl+yeAe r+rdPvyG+vg+i+ lqq+l SapurV1A.0428s0090.4.p 7 PCAACKFLRRKCTQECVFAPYFPPDQPQKFASVHKVFGASNVAKLLNELSAAQREDAVNSLAYEAEERLRDPVYGCVGLISILQQRL 93 7************************************************************************************** PP DUF260 88 eqlkaelallkee 100 +ql+++l ++k+e SapurV1A.0428s0090.4.p 94 KQLQNDLYSAKKE 106 *******999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.653 | 6 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.6E-42 | 7 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MSSSNSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQKFASVH KVFGASNVAK LLNELSAAQR 60 EDAVNSLAYE AEERLRDPVY GCVGLISILQ QRLKQLQNDL YSAKKELVNY IEGQAMLPML 120 MQPQHLGNSS FSNGMPMMGI PTAGQMGMRA DTHQHHQVNP QQIFEAQQLA AVVAARDQQE 180 MLRAYEQQQH TQAQQEIVRF HGGFEPANSV SAAGFNHMNP AAAMSPSLAL GTFDNTFQIQ 240 PQEEPQPNQL QEELLLQPQS QQPQQIFQHP KSETEEGRSV GPSC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 9e-51 | 3 | 114 | 7 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 9e-51 | 3 | 114 | 7 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0428s0090.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024456992.1 | 1e-150 | LOB domain-containing protein 36 | ||||
Refseq | XP_024456993.1 | 1e-150 | LOB domain-containing protein 36 | ||||
Refseq | XP_024456994.1 | 1e-150 | LOB domain-containing protein 36 | ||||
Refseq | XP_024456995.1 | 1e-150 | LOB domain-containing protein 36 | ||||
Swissprot | Q9FKZ3 | 2e-81 | LBD36_ARATH; LOB domain-containing protein 36 | ||||
TrEMBL | A0A2I4KL02 | 1e-150 | A0A2I4KL02_POPTR; LBD family protein | ||||
STRING | POPTR_0005s14150.1 | 1e-149 | (Populus trichocarpa) | ||||
STRING | POPTR_0007s11460.1 | 1e-150 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 2e-80 | ASYMMETRIC LEAVES 2-like 1 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0428s0090.4.p |
Publications ? help Back to Top | |||
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