PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Basic Information? help Back to Top

TF ID

SapurV1A.0423s0190.2.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

C2H2

Protein Properties

Length: 420aa MW: 47790.1 Da PI: 7.1717

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0423s0190.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.8	8.5e-05	166	189	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C+ Cg+ ++++ +Lk+H + H SapurV1A.0423s0190.2.p 166 YVCGVCGRKCKTNLDLKKHFKQlH 189 9******************98766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.1010	1.2E-5	88	156	IPR029060	PIN domain-like
PROSITE profile	PS50157	10.679	166	194	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	168	189	IPR007087	Zinc finger, C2H2
CDD	cd06167	9.20E-12	180	320	No hit	No description
Gene3D	G3DSA:3.40.50.1010	1.2E-5	251	316	IPR029060	PIN domain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence Send to blast
MTPLCKAIDT TAASLLKPSI LLHQTPLNFC HSLNYTPILN KNNLTLTSKP PPNHLRPITA 60 TADASHPAAT SEIDMVRNRQ GIYTSKQNKV VVLWDLDNKP PRGPPYPAAM ALKTLAQKFG 120 EVIDMCAYAN RHAFIHLPHW VLEERRERKH LDILERKDIV SPSQPYVCGV CGRKCKTNLD 180 LKKHFKQLHE RERQKKVNRM RSLKGKKRQR YKERFVSGNH KYNEEARRLL TPKVGYGLAA 240 ELRRAGVYVK TVEDKPQAAD WALKRQIEHS MSRGVDWLVL VSDDSDFSEI LRKAREGNLG 300 TVVVGDRDRA LGRHADLWVP WIGVENGELT EKDLVPKGRW RSEDLENDGG LFSVTDFDED 360 GDYGGSDLEG FVDGLVMARS GFNGMRISAF SEGEEEDEQD YLLYDSEYEE IEFEDEGFR*

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence Send to blast

MTPLCKAIDT TAASLLKPSI LLHQTPLNFC HSLNYTPILN KNNLTLTSKP PPNHLRPITA  60
TADASHPAAT SEIDMVRNRQ GIYTSKQNKV VVLWDLDNKP PRGPPYPAAM ALKTLAQKFG  120
EVIDMCAYAN RHAFIHLPHW VLEERRERKH LDILERKDIV SPSQPYVCGV CGRKCKTNLD  180
LKKHFKQLHE RERQKKVNRM RSLKGKKRQR YKERFVSGNH KYNEEARRLL TPKVGYGLAA  240
ELRRAGVYVK TVEDKPQAAD WALKRQIEHS MSRGVDWLVL VSDDSDFSEI LRKAREGNLG  300
TVVVGDRDRA LGRHADLWVP WIGVENGELT EKDLVPKGRW RSEDLENDGG LFSVTDFDED  360
GDYGGSDLEG FVDGLVMARS GFNGMRISAF SEGEEEDEQD YLLYDSEYEE IEFEDEGFR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0423s0190.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006374901.1	0.0	uncharacterized protein LOC18104859
TrEMBL	U5FNF9	0.0	U5FNF9_POPTR; Uncharacterized protein
STRING	POPTR_0014s02520.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52010.1	1e-157	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0423s0190.2.p