PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0423s0130.4.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 295aa    MW: 31988.7 Da    PI: 5.3531
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0423s0130.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.14.9e-16130176455
                             HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  SapurV1A.0423s0130.4.p 130 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 176
                             6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-20123186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-20123186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.86126175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.39E-18129180No hitNo description
PfamPF000101.7E-13130176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-18132181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MADLYGAAAS AAATEPEEIS TFLHQLLHNN SSSSSKFMHQ ALSTPVVNDL ELLDRHRFSE  60
TECGAGVNFS DPDGYYVKEG VENAVVSKRG GVSVEDDLGD FSCDSEKGVE VQANAARPRS  120
SSKRSRAAEV HNLSEKRRRS RINEKMKALQ NLIPNSNKTD KASMLDEAIE YLKQLQLQVQ  180
MLTMRNGLSL HPMCLPGALQ PMQLPLSGMS FDEGNGLLTT NTLTGMFSAS EENSQQNALN  240
LPTQCTISNQ PITIPSGSNI ASSETNFGFE PLIHINHAPF NLSTSSKVNS MQQP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0423s0130.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006374908.10.0transcription factor SPATULA isoform X1
TrEMBLB9MVT50.0B9MVT5_POPTR; Uncharacterized protein
STRINGPOPTR_0014s02590.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.12e-41bHLH family protein