PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0423s0130.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | bHLH | ||||||||
Protein Properties | Length: 313aa MW: 33748.6 Da PI: 5.1836 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50 | 5.3e-16 | 129 | 175 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn E+rRR+riN+++ L+ l+P++ K +Ka++L +A+eY+k+Lq SapurV1A.0423s0130.3.p 129 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 175 6*************************7.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.96E-20 | 122 | 185 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.5E-20 | 122 | 185 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.86 | 125 | 174 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.92E-18 | 128 | 179 | No hit | No description |
Pfam | PF00010 | 1.8E-13 | 129 | 175 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.3E-18 | 131 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MADLYGAAAS AAATEPEEIS TFLHQLLHNN SSSSSKFMHQ ALSTPVVNDL ELLDRHRFSE 60 TECGAGVNFS DPDGYYVKEG VENAVVSKRG GVSVEDDLGD FSCDSEGVEV QANAARPRSS 120 SKRSRAAEVH NLSEKRRRSR INEKMKALQN LIPNSNKTDK ASMLDEAIEY LKQLQLQVQM 180 LTMRNGLSLH PMCLPGALQP MQLPLSGMSF DEGNGLLTTN TLTGMFSASE ENSQQNALNL 240 PTQCTISNQP ITIPSGSNIA SSETNFGFEP LIHINHAPFN LSTSSKEICR EGTPQAQLGM 300 NQTTKASPSG VS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that plays a role in floral organogenesis. Promotes the growth of carpel margins and of pollen tract tissues derived from them. {ECO:0000269|PubMed:10225997, ECO:0000269|Ref.8}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0423s0130.3.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by the A class gene AP2 in the first whorl and by ARF3/ETT in gynoecium. {ECO:0000269|PubMed:11245574}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024441177.1 | 0.0 | transcription factor SPATULA isoform X2 | ||||
Swissprot | Q9FUA4 | 3e-43 | SPT_ARATH; Transcription factor SPATULA | ||||
TrEMBL | A0A2K1XPG2 | 0.0 | A0A2K1XPG2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s02590.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36930.1 | 1e-42 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0423s0130.3.p |