PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0423s0130.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 339aa    MW: 37162.7 Da    PI: 5.9528
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0423s0130.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.86e-16129175455
                             HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  SapurV1A.0423s0130.1.p 129 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 175
                             6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-20122185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-20122185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.86125174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.26E-18128179No hitNo description
PfamPF000102.0E-13129175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-18131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MADLYGAAAS AAATEPEEIS TFLHQLLHNN SSSSSKFMHQ ALSTPVVNDL ELLDRHRFSE  60
TECGAGVNFS DPDGYYVKEG VENAVVSKRG GVSVEDDLGD FSCDSEGVEV QANAARPRSS  120
SKRSRAAEVH NLSEKRRRSR INEKMKALQN LIPNSNKTDK ASMLDEAIEY LKQLQLQVQM  180
LTMRNGLSLH PMCLPGALQP MQLPLSGMSF DEGNGLLTTN TLTGMFSASE ENSQQNALNL  240
PTQCTISNQP ITIPSGSNIA SSETNFGFEP LIHINHAPFN LSTSSKGRHT AGTARDESNY  300
EGFSIWCFLV TILLFRYMIN EIAANNSFHL FKYHMSCK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0423s0130.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024441177.10.0transcription factor SPATULA isoform X2
TrEMBLA0A2K1XPG20.0A0A2K1XPG2_POPTR; Uncharacterized protein
STRINGPOPTR_0014s02590.11e-180(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22763379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.11e-40bHLH family protein