PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0418s0210.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 97aa    MW: 10966.3 Da    PI: 7.609
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0418s0210.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.65.2e-07652247
                            SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                             +WT+   +l+ +a + +      +W+  ar +g  +t +++k ++q++
  SapurV1A.0418s0210.1.p  6 SNWTPRQNKLFENALAIFDQQspdRWHNLARAVG--KTVEEVKVHYQML 52
                            58*****************99************8..9**********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007177.7E-5455IPR001005SANT/Myb domain
SuperFamilySSF466892.06E-11660IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MASGSSNWTP RQNKLFENAL AIFDQQSPDR WHNLARAVGK TVEEVKVHYQ MLVEDVQQIE  60
AGEIPLPNYT RRAGASNKSY HCIDDQAQRL KNLNLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-258951192RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0418s0210.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1453601e-116EF145360.1 Populus trichocarpa clone WS01123_L07 unknown mRNA.
GenBankEF1486821e-116EF148682.1 Populus trichocarpa x Populus deltoides clone WS0136_E18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002303127.13e-62protein RADIALIS-like 3
RefseqXP_011024437.13e-62PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1737e-28RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA9PAX06e-61A9PAX0_POPTR; MYB-like family protein
STRINGPOPTR_0002s26160.11e-61(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.23e-30RAD-like 6