PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0417s0150.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 265aa    MW: 30618.6 Da    PI: 5.0832
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0417s0150.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.32.3e-151461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+W++eEd++l  +v+++G  +W+  +r  g+ R++k+c++rw +yl
  SapurV1A.0417s0150.1.p 14 KGAWSKEEDDKLRVYVQKYGHWNWRQLPRFAGLSRCGKSCRLRWMNYL 61
                            79******************99************************97 PP
2Myb_DNA-binding56.75.6e-1867111147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             rg+++ eEd l+++ +++lG++ W+tIa +++ gRt++++k++w++ 
  SapurV1A.0417s0150.1.p  67 RGNFSHEEDNLILQMHEELGNK-WSTIAGKLP-GRTDNEIKNHWHTN 111
                             89********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.662961IPR017930Myb domain
SuperFamilySSF466893.88E-3112108IPR009057Homeodomain-like
SMARTSM007175.4E-121363IPR001005SANT/Myb domain
PfamPF002498.8E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.7E-231568IPR009057Homeodomain-like
CDDcd001673.18E-91661No hitNo description
PROSITE profilePS5129427.19362116IPR017930Myb domain
SMARTSM007178.2E-1666114IPR001005SANT/Myb domain
PfamPF002499.2E-1667111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-2669116IPR009057Homeodomain-like
CDDcd001673.99E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MVKATLVDKN GFRKGAWSKE EDDKLRVYVQ KYGHWNWRQL PRFAGLSRCG KSCRLRWMNY  60
LRPDVKRGNF SHEEDNLILQ MHEELGNKWS TIAGKLPGRT DNEIKNHWHT NLSKKVKRNQ  120
SVSSGLVDKE QSRETSQSED SQTEKSETES VSVNSQPKPH HQPDILENFP SQEISCSEFS  180
SMNNDSVSSS VKGAADGFSP AEIFQDSVSD FWNLPFLADN NDNQDGYHSL LFTEEVYMHS  240
YEFNYDDDSI DWIQQMMQEL EYSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-281411627128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0417s0150.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011047493.11e-160PREDICTED: myb-related protein 308-like
TrEMBLB9INU51e-148B9INU5_POPTR; Uncharacterized protein
STRINGPOPTR_0019s14120.11e-149(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.29e-54myb domain protein 9