PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0417s0140.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 264aa    MW: 30335.1 Da    PI: 6.1775
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0417s0140.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.68.8e-161461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+W+ eEd++l + v+++G  +W+ I++  g+ R++k+c++rw +yl
  SapurV1A.0417s0140.1.p 14 KGAWSREEDDKLREHVEKYGLWNWREIPKFAGLSRCGKSCRLRWMNYL 61
                            79******************99************************97 PP
2Myb_DNA-binding52.89e-1768111247
                             SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             g+  +eE++l++++++++G++ W++Ia++++ gRt++++k++w+ +
  SapurV1A.0417s0140.1.p  68 GNYNEEEEDLILKLHEKHGNK-WSLIAAKLP-GRTDNEVKNYWHAH 111
                             67889****************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.516961IPR017930Myb domain
SuperFamilySSF466898.07E-3111108IPR009057Homeodomain-like
SMARTSM007172.1E-131363IPR001005SANT/Myb domain
PfamPF002491.5E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-231568IPR009057Homeodomain-like
CDDcd001679.56E-111661No hitNo description
PROSITE profilePS5129425.49462116IPR017930Myb domain
SMARTSM007175.4E-1766114IPR001005SANT/Myb domain
PfamPF002491.4E-1568111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2569115IPR009057Homeodomain-like
CDDcd001673.37E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MVRAPYFDKN GVKKGAWSRE EDDKLREHVE KYGLWNWREI PKFAGLSRCG KSCRLRWMNY  60
LRPDVKHGNY NEEEEDLILK LHEKHGNKWS LIAAKLPGRT DNEVKNYWHA HLKKRSVKKQ  120
NTLVLKEKCS GHTSESEGSQ MKKEMEARTV VSYTPSNPIL ESTPLSPETS CSELSNMSTN  180
FAPKLPVSAG SNWNNIAENI LPSVPTFGEF IGDFWTEPFL TDNAYTQDDF PGVSFCQEEL  240
FVSYYDDGMD FYNEMMKELP GNN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-261411527127MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds DNA to the AC cis-elements 5'-ACCTACC-3', 5'-ACCAACC-3' and 5'-ACCTAAC-3' of promoters and specifically activates lignin biosynthetic genes during secondary wall formation mediated by SND1. {ECO:0000269|PubMed:19122102}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0417s0140.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by light (PubMed:9839469). Regulated by the SND1 close homologs NST1, NST2, VND6, and VND7 and their downstream targets MYB46 and MYB83 (PubMed:19122102, PubMed:22197883). {ECO:0000269|PubMed:19122102, ECO:0000269|PubMed:22197883, ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011047494.11e-175PREDICTED: myb-related protein Myb4-like
SwissprotQ9SA471e-50MYB58_ARATH; Transcription factor MYB58
TrEMBLB9INU41e-174B9INU4_POPTR; Uncharacterized protein
STRINGPOPTR_0019s14130.11e-174(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.24e-53myb domain protein 9
Publications ? help Back to Top
  1. Fernández-Pérez F,Vivar T,Pomar F,Pedreño MA,Novo-Uzal E
    Peroxidase 4 is involved in syringyl lignin formation in Arabidopsis thaliana.
    J. Plant Physiol., 2015. 175: p. 86-94
    [PMID:25506770]
  2. Noda S, et al.
    The expression of a rice secondary wall-specific cellulose synthase gene, OsCesA7, is directly regulated by a rice transcription factor, OsMYB58/63.
    Planta, 2015. 242(3): p. 589-600
    [PMID:26070439]
  3. Takeuchi M,Kegasa T,Watanabe A,Tamura M,Tsutsumi Y
    Expression analysis of transporter genes for screening candidate monolignol transporters using Arabidopsis thaliana cell suspensions during tracheary element differentiation.
    J. Plant Res., 2018. 131(2): p. 297-305
    [PMID:28921082]