PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0415s0050.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GRAS
Protein Properties Length: 471aa    MW: 52581.2 Da    PI: 5.9953
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0415s0050.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS459.52e-140464671374
                    GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                             l++lLl+cA++v+sg+le+a+  L ++s+laspdgd+mqR+aayf+eALa+r+++ ++++ +al++++ +   +see+ ++klf+e+
  SapurV1A.0415s0050.1.p  46 LIHLLLTCANHVASGSLENAEISLGQISHLASPDGDTMQRIAAYFAEALARRIVKAWPGIDRALNATQIT--LVSEEILVRKLFYEM 130
                             689**************************************************************99998..7************** PP

                    GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgv 174
                             +P++k+++++ NqaI ea+ege++vH iD+ + +++QW+aLlqa++ Rpegpp+lRiTg+++    +ke l +++++L + Ae+l++
  SapurV1A.0415s0050.1.p 131 FPFIKVAFVLSNQAIIEAMEGEKMVHLIDLHAAEPAQWIALLQAFSVRPEGPPHLRITGIHP----HKEVLDQMAQKLIEEAEKLDI 213
                             **************************************************************....9******************** PP

                    GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll............................................... 214
                             pf+fn+ +++rle+l++e+Lrvk+gEala+++vlqlh +l                                               
  SapurV1A.0415s0050.1.p 214 PFQFNP-IVSRLENLDIEKLRVKTGEALAISSVLQLHAFLasddelgkkspstlknsngvnmqrvrqmnqgtlgellekdtangysp 299
                             ******.79****************************************************************************** PP

                    GRAS 215 ..........desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291
                                       ++++s+  ++d++L+ +++lsPk++v++eq+++hn+++++er+leal++y+alfd+le++++r+s er kvE++l+g
  SapurV1A.0415s0050.1.p 300 spdsasssplSSTASM--KTDDFLNSLWGLSPKLMVITEQDSNHNGSTLMERLLEALYTYAALFDCLESTVSRTSMERLKVEKMLFG 384
                             ****987664444444..46******************************************************************* PP

                    GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                             +ei+n++a ega r+erhe+lekW +rl++aGF++v+ls++ + q +++l+ ++ dgyr++ee+gs+v++W+drpL+svSaWr
  SapurV1A.0415s0050.1.p 385 EEIKNIIAFEGAGRKERHEKLEKWIQRLDMAGFGNVSLSYYGVLQGRRMLQGYGCDGYRMKEENGSVVICWQDRPLFSVSAWR 467
                             **********************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.92620447IPR005202Transcription factor GRAS
PfamPF035146.9E-13846467IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MYQDDGSSSV TSSPLQFFST MPVSPSMGSP YPWVRELKSE ERGLYLIHLL LTCANHVASG  60
SLENAEISLG QISHLASPDG DTMQRIAAYF AEALARRIVK AWPGIDRALN ATQITLVSEE  120
ILVRKLFYEM FPFIKVAFVL SNQAIIEAME GEKMVHLIDL HAAEPAQWIA LLQAFSVRPE  180
GPPHLRITGI HPHKEVLDQM AQKLIEEAEK LDIPFQFNPI VSRLENLDIE KLRVKTGEAL  240
AISSVLQLHA FLASDDELGK KSPSTLKNSN GVNMQRVRQM NQGTLGELLE KDTANGYSPS  300
PDSASSSPLS STASMKTDDF LNSLWGLSPK LMVITEQDSN HNGSTLMERL LEALYTYAAL  360
FDCLESTVSR TSMERLKVEK MLFGEEIKNI IAFEGAGRKE RHEKLEKWIQ RLDMAGFGNV  420
SLSYYGVLQG RRMLQGYGCD GYRMKEENGS VVICWQDRPL FSVSAWRCRK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-37464674375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0415s0050.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2089400.0AC208940.1 Populus trichocarpa clone JGIACSB1085-L05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002314093.10.0scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A3N7FIU40.0A0A3N7FIU4_POPTR; Uncharacterized protein
TrEMBLB9HP160.0B9HP16_POPTR; Uncharacterized protein
STRINGPOPTR_0009s05330.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]