PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0407s0270.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family FAR1
Protein Properties Length: 829aa    MW: 95299 Da    PI: 8.3202
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0407s0270.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR166.95.3e-21112186189
                    FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 
                             +fYn YA++vGF++r+ + ++s+++g++ +r+fvCskeg++ +              +rtgC a ++v+++++gkw++++++++HnH
  SapurV1A.0407s0270.1.p 112 QFYNVYATRVGFRTRTGQLYRSRTDGSVSSRRFVCSKEGFQLS--------------SRTGCPAFIRVQRRDSGKWVIDQMHKDHNH 184
                             6***************************************876..............589*************************** PP

                    FAR1  88 el 89 
                             +l
  SapurV1A.0407s0270.1.p 185 QL 186
                             98 PP
2FAR169.48.6e-22265341191
                    FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 
                             +fY +YA e+GF++r+ +  +sk++g+it+r+fvCskeg++++              +r+gC a +++k++++g+w+v++l+++HnH
  SapurV1A.0407s0270.1.p 265 NFYVRYADEAGFKTRIGQLFRSKNDGSITSRRFVCSKEGFQHP--------------SRVGCGAFMRIKRQESGTWMVDRLQKDHNH 337
                             6***************************************999..............4899************************** PP

                    FAR1  88 elap 91 
                             +l p
  SapurV1A.0407s0270.1.p 338 DLEP 341
                             *975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.0E-17112186IPR004330FAR1 DNA binding domain
PfamPF031012.1E-17265341IPR004330FAR1 DNA binding domain
PfamPF105511.4E-28439532IPR018289MULE transposase domain
PROSITE profilePS5096610.423714750IPR007527Zinc finger, SWIM-type
PfamPF044343.3E-8721749IPR007527Zinc finger, SWIM-type
SMARTSM005757.1E-8725752IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 829 aa     Download sequence    Send to blast
MEKRQQRRPP PPPLPFEIHS LDLEPDPLVH TQHMHKKGKK DMVFDSIPSL FNNIKSSNSD  60
PYSEEYGNAV IVRAYPLGMV RANSNVNVEG GRESGVEPHK GLEFDSADDA RQFYNVYATR  120
VGFRTRTGQL YRSRTDGSVS SRRFVCSKEG FQLSSRTGCP AFIRVQRRDS GKWVIDQMHK  180
DHNHQLGDVE ESHPPVLQQK APMGRKSSVE VSSRKKLKLL AEVDDGQPCS SGSISVKRVR  240
TGANGQPIAE PYAGLVFTSP DEAYNFYVRY ADEAGFKTRI GQLFRSKNDG SITSRRFVCS  300
KEGFQHPSRV GCGAFMRIKR QESGTWMVDR LQKDHNHDLE PQTGTHKKSS TAPKKFIDEV  360
NGGLDSLDLL EINNGVHFSS SQGNNIGSEW YRLLLDYFQR RQAEDTGFFY SMEVDNGVCM  420
SIFWADGRSR FACSQFGDVV VLDTSYRKTN YLVPFATFVG VNHHKQPVLL GCALIANESK  480
ESFIWLFRTW LRAMSGCRPK SIIADQDMAI QQAIGHVFPG TRHRFSMWQI REKERENLRS  540
VSTEFKYEYE KCIYESQTNA EFNTMWNALV NKYGLKENAW LKEMYEKRES WVPLYLRGTF  600
FAGIPMNESM EPFFGIFLNA ETPLGDFIAR YEQGLAQRRE EERKEDFNSS NLQAFLQTKE  660
PIEEQCRRLY TLNVFQIFQK ELLQCYNYLG IKSYEEGTIS RYSVRRCGNE LEKHMVTFSA  720
SNLDVSCSCQ MFEFEGVLCR HVLRVFIMLD IREIPSCYLL HRWTRNAEHG IVCDVDSGVS  780
FQELKGLMVW SLRETACKYI ESGTTSLEKY RLACEIMREG TKKVCRHR*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0407s0270.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311819.20.0protein FAR1-RELATED SEQUENCE 7
SwissprotQ9M8J30.0FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBLB9HMA50.0B9HMA5_POPTR; Uncharacterized protein
STRINGPOPTR_0008s20380.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.10.0FAR1-related sequence 7
Publications ? help Back to Top
  1. Ritter A, et al.
    The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis.
    Nat Commun, 2017. 8: p. 15235
    [PMID:28492275]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]