PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0406s0070.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 269aa    MW: 29079.9 Da    PI: 4.535
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0406s0070.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.00021242265123
                             EEETTTTEEESSHHHHHHHHHH.T CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                             ++C+ C ksF +   Lk+H +  H
  SapurV1A.0406s0070.1.p 242 FSCKSCEKSFGTDGALKSHSQAkH 265
                             89*****************76655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF030661.6E-86154No hitNo description
PROSITE profilePS5015711.011242268IPR007087Zinc finger, C2H2
PROSITE patternPS000280244265IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009294Biological ProcessDNA mediated transformation
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010162Biological Processseed dormancy process
GO:0005730Cellular Componentnucleolus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MSSMEFWGVE VKAGEPLKVE PKDFCMIHLS QAALGESKKG RESVPLFVKV NEKKIVLGTL  60
SPENIPQLSF DLVFETEFEL SHNWKNGSVF FCGYQVIPDD DASEFSSDEE DFEFAKAAIA  120
KDKAAKPEKT KATLVEPSKD DDEDDSDEDD ESEEGMSLDE DLDDSDDESD SEDEETPKKA  180
ETSKKRANES ATKTPVSSKK AKAATPQKSD VKKPGQVTPH PSKGKAAANG NSSKSPKSGG  240
NFSCKSCEKS FGTDGALKSH SQAKHAAK*
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0406s0070.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By fertilization. {ECO:0000269|PubMed:15082924}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1447300.0EF144730.1 Populus trichocarpa clone WS01117_I04 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011044413.11e-138PREDICTED: histone deacetylase HDT1-like
SwissprotQ6V9I65e-63HDT1_SOLCH; Histone deacetylase HDT1
TrEMBLA9P9961e-134A9P996_POPTR; Uncharacterized protein
STRINGPOPTR_0009s15160.11e-136(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10253067
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.24e-35histone deacetylase 3
Publications ? help Back to Top
  1. Lagacé M,Chantha SC,Major G,Matton DP
    Fertilization induces strong accumulation of a histone deacetylase (HD2) and of other chromatin-remodeling proteins in restricted areas of the ovules.
    Plant Mol. Biol., 2003. 53(6): p. 759-69
    [PMID:15082924]