PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0405s0090.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GRAS
Protein Properties Length: 589aa    MW: 64544.8 Da    PI: 6.2287
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0405s0090.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4562.3e-1392185771374
                    GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                             lv+lL++cAeav+++++++a+al++++  la +++ +m+++a+yf+eALa r+++        l p+++ +++ ++ l++   f+e+
  SapurV1A.0405s0090.1.p 218 LVHLLMACAEAVQDNNFNQAEALVKQIGFLAVSQAGAMRKVATYFAEALAWRIYK--------LYPQNSVDHSLTDILQI--HFYET 294
                             68*****************************************************........55666654456666555..4**** PP

                    GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgv 174
                             +P+lkf+h+taNqaIlea+eg++rvH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p+++++++l+e+g++La++Ae+++v
  SapurV1A.0405s0090.1.p 295 CPYLKFAHFTANQAILEAFEGKKRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAHDNTDQLQEVGWKLAQLAETIHV 381
                             *************************************************************************************** PP

                    GRAS 175 pfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
                             +fe++ +va++l+dl+ ++L+++p   E++aVn+v++ h+ll+ ++++++    vL++vk+++P++v+vveqea+hn++ Fl+rf+e
  SapurV1A.0405s0090.1.p 382 EFEYRGFVANSLADLDASMLELRPpeFESVAVNSVFEFHKLLAIPGAMKK----VLSVVKQMKPEIVTVVEQEANHNGPVFLDRFTE 464
                             ************************8889**************99999999....********************************* PP

                    GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk. 345
                             +l+yys+lfdsle ++   s++++++++++l+++i+nvvaceg +r+erhetl +Wr rl +aGF pv+l+++a kqa++ll+ ++ 
  SapurV1A.0405s0090.1.p 465 SLHYYSTLFDSLEGSV---SSQDKVMSEVYLAKQICNVVACEGHSRVERHETLTQWRTRLVSAGFAPVHLGSNAFKQASMLLALFAg 548
                             ***************7...9999**************************************************************** PP

                    GRAS 346 sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                             +dgyrvee++g+l+lgW++rpL+++SaWr
  SapurV1A.0405s0090.1.p 549 GDGYRVEENNGCLMLGWHTRPLITTSAWR 577
                             ****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120413.1E-2159113IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011291.9E-1859136No hitNo description
PROSITE profilePS5098566.713192556IPR005202Transcription factor GRAS
PfamPF035147.9E-137218577IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MKREHSNLHP QQLTDPFSLA GGGYSLTSTS TGTSTMTSNN GKAKTWEEAK GNQADGGMDE  60
LLAVLGYKVR SSDMAGVAQK LEQLEEVMGH AQEDGLSHLA SDFFNPNLHF DPSADSLLAP  120
AESSTVTSID FSDHKHHQQP KLFEKSTSSG YDLKVIPGKA ACSQPQIDSR ESKRLKTDPY  180
QTSASSSSPS TTVGSFMGSA ESTRPVVLVD SQENGVRLVH LLMACAEAVQ DNNFNQAEAL  240
VKQIGFLAVS QAGAMRKVAT YFAEALAWRI YKLYPQNSVD HSLTDILQIH FYETCPYLKF  300
AHFTANQAIL EAFEGKKRVH VIDFSMNQGM QWPALMQALA LRPGGPPAFR LTGIGPPAHD  360
NTDQLQEVGW KLAQLAETIH VEFEYRGFVA NSLADLDASM LELRPPEFES VAVNSVFEFH  420
KLLAIPGAMK KVLSVVKQMK PEIVTVVEQE ANHNGPVFLD RFTESLHYYS TLFDSLEGSV  480
SSQDKVMSEV YLAKQICNVV ACEGHSRVER HETLTQWRTR LVSAGFAPVH LGSNAFKQAS  540
MLLALFAGGD GYRVEENNGC LMLGWHTRPL ITTSAWRVHN HDPVVGAA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-6921357613377Protein SCARECROW
5b3h_D1e-6921357613377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0405s0090.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX1024710.0JX102471.1 Populus tomentosa DELLA domain GRAS family transcription factor GAI mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002314799.20.0DELLA protein GAIP
SwissprotQ6EI050.0GAIPB_CUCMA; DELLA protein GAIP-B
TrEMBLB9HW490.0B9HW49_POPTR; Uncharacterized protein
STRINGPOPTR_0010s12080.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80334121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein