PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0403s0180.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GeBP
Protein Properties Length: 489aa    MW: 53591.1 Da    PI: 4.6135
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0403s0180.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573108.64.6e-34154248397
                  DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkif 89 
                             +qr+ws+eDei++L  +i+f++++gk++s d+ +fy  vk+s+ f++s++q+v+KirrLKkK+ ++v++ +sg+   fsk+hd ++ 
  SapurV1A.0403s0180.1.p 154 SQRIWSDEDEIMILNCMIKFQNEKGKNSSPDTADFYVSVKDSLYFNASNNQFVKKIRRLKKKYFTDVETNESGQYEIFSKPHDLECV 240
                             79************************************************************************************* PP

                  DUF573  90 elskkiWg 97 
                             el+k+iWg
  SapurV1A.0403s0180.1.p 241 ELAKQIWG 248
                             *******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.6E-28155248IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MARKRLFEEP PPALSSSEEE ETDDQEELQN GTVRTQQNAA GEKSNDDEDG TEDDDDDDEE  60
EDDGGGGAEV EKKKPDLPSK TPKPNLVSAL ESDSDADSED TESTPPPSPS LSGFTVKAIS  120
PKRKSDPKPE QPKKENDADE KKAQKGSGPG TGGSQRIWSD EDEIMILNCM IKFQNEKGKN  180
SSPDTADFYV SVKDSLYFNA SNNQFVKKIR RLKKKYFTDV ETNESGQYEI FSKPHDLECV  240
ELAKQIWGAG GFVVGNKSNA SKNSGGNDAV VGGGGGGGGG IVLAVAKLWS GGVNGKGNEA  300
SVKKGKRGSS EEVSGEGKQG NLKKRKQVLS EKGDEGEEGN VKKEKRILSE EVNGERKGKG  360
GKKEKQAANN ELNGGEDANV KKQMSFVNRE WKESSMKKQE EVEGEEGSDD LWEKYPHLRS  420
SLLAEDLPED VKERAMMMLG KVSEEKLVEL EREWRSLMNA KLEFFMMEKD LIAKQMKLAL  480
DGLKSRDY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0403s0180.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2333703e-53CU233370.1 Populus EST from severe drought-stressed opposite wood.
GenBankCU2339853e-53CU233985.1 Populus EST from severe drought-stressed opposite wood.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002306307.30.0probable transcription factor At1g11510
TrEMBLA0A2K2AD050.0A0A2K2AD05_POPTR; Uncharacterized protein
STRINGPOPTR_0005s07650.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2317134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.12e-20DNA-binding storekeeper protein-related transcriptional regulator