PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0402s0180.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 343aa    MW: 36505.4 Da    PI: 7.7769
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0402s0180.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.51.6e-10275320655
                             HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             +++Er RR ri  ++ +L++l+P+     +k  s a++L  Av++Ik Lq
  SapurV1A.0402s0180.1.p 275 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYADMLDFAVQHIKGLQ 320
                             689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.618269319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.02E-14272333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.70E-10273324No hitNo description
Gene3DG3DSA:4.10.280.104.7E-13274330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.9E-8275320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-12275325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MYQQPSSSSS SPQKPAVPGG LTRYGSAPGS FLTRAVDSVI GVDRDLSGLG STSLVGSRQY  60
FSGDSSSVTS ESTCKVNSSS CDPKAPKSGG SLQKSYGLNE VEHGAGSLVR QRSSPAGFLS  120
HLATENGGFS ITRGSGGYNV HSGPGGGHSV SRLKPQLSFT RQESLSQISE VSENVVEGIG  180
SDNNHQNCSH SYSAAGFGME SWDNANSIVF SGPPSKQARN GDGDIYSCFN GLETQFSLPQ  240
TSLEIETVEK LLHIPEDSVP CKIRAKRGFA THPRSIAERE RRTRISGKLK KLQDLVPNMD  300
KQTSYADMLD FAVQHIKGLQ NEVEKLRKEM GNCTCGCEQS TP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0402s0180.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011042788.10.0PREDICTED: transcription factor bHLH128-like
SwissprotQ8H1022e-91BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A2K2BN680.0A0A2K2BN68_POPTR; BHLH family protein
STRINGcassava4.1_010829m1e-173(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76803140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.12e-83bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]