 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
SapurV1A.0400s0280.2.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 233aa MW: 27031.8 Da PI: 9.3674 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| SapurV1A.0400s0280.2.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 90.7 | 7.3e-29 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
+rienk+ rqvtfskRrng+lKKA+ELS LCdaeva+iifss+gkl+e+
SapurV1A.0400s0280.2.p 9 ERIENKISRQVTFSKRRNGLLKKAYELSLLCDAEVALIIFSSHGKLFEFG 58
69**********************************************95 PP
|
| 2 | K-box | 93.6 | 3.2e-31 | 77 | 172 | 5 | 100 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91
++++ e+ +++l+qe+++L+++ e Lqr+qR++lGedL++L +keL+++e+qL+k l++ R++K++l+++ +eel+kke+el+een
SapurV1A.0400s0280.2.p 77 QDTNILEEGSQTLYQEVSRLRAKCEALQRSQRNFLGEDLQPLAFKELEKIEKQLDKTLSQARQRKTQLMFDRMEELRKKEQELEEEN 163
5566778889***************************************************************************** PP
K-box 92 kaLrkklee 100
++L++klee
SapurV1A.0400s0280.2.p 164 RQLKTKLEE 172
******987 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00432 | 8.6E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 31.104 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 1.68E-40 | 2 | 72 | No hit | No description |
| SuperFamily | SSF55455 | 1.44E-31 | 2 | 83 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 9.3E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 2.6E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 9.3E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 9.3E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS51297 | 15.929 | 86 | 176 | IPR002487 | Transcription factor, K-box |
| Pfam | PF01486 | 7.9E-27 | 86 | 170 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 233 aa
Download sequence Send
to blast |
MGRGKVVLER IENKISRQVT FSKRRNGLLK KAYELSLLCD AEVALIIFSS HGKLFEFGSV 60
DINNTLQRYR QCCFNTQDTN ILEEGSQTLY QEVSRLRAKC EALQRSQRNF LGEDLQPLAF 120
KELEKIEKQL DKTLSQARQR KTQLMFDRME ELRKKEQELE EENRQLKTKL EEVLRLPVLQ 180
GAGDPSKADG NKHSQSQPAL QMGYHQYVYQ EQAFDARTIF PGKSNPIPRW FS*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
