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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
SapurV1A.0400s0250.3.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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| Family |
MIKC_MADS |
| Protein Properties |
Length: 210aa MW: 23960.5 Da PI: 8.7114 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| SapurV1A.0400s0250.3.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 86.7 | 1.3e-27 | 9 | 55 | 1 | 47 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
krien + rqvtfskR+ng+lKKA+ELS+LCdaevaviifs++g+l+
SapurV1A.0400s0250.3.p 9 KRIENATSRQVTFSKRKNGLLKKAYELSILCDAEVAVIIFSQKGTLF 55
79******************************************996 PP
|
| 2 | K-box | 72 | 1.8e-24 | 81 | 170 | 9 | 98 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95
e+ e+l++e+a++ k+ie L++ qR+llG+dL+s+s keL+ + +qLe sl++iR++K++l+ eqie+lq+ke l en +L+
SapurV1A.0400s0250.3.p 81 DVEQYKEQLRHESANMAKKIEILETLQRKLLGQDLDSCSPKELKDIGNQLEISLSNIRARKTQLFEEQIEQLQEKETLLLMENARLS 167
45677889******************************************************************************9 PP
K-box 96 kkl 98
k+
SapurV1A.0400s0250.3.p 168 KQC 170
985 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50066 | 28.553 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 1.4E-36 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 1.47E-34 | 3 | 71 | No hit | No description |
| PRINTS | PR00404 | 5.8E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 8.63E-27 | 3 | 73 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 3.3E-25 | 10 | 55 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 5.8E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 5.8E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 1.2E-23 | 85 | 170 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 14.993 | 86 | 176 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 210 aa
Download sequence Send
to blast |
MVRGKVQLKR IENATSRQVT FSKRKNGLLK KAYELSILCD AEVAVIIFSQ KGTLFASADQ 60
IQKTIDRYRE NAKQVHTDRI DVEQYKEQLR HESANMAKKI EILETLQRKL LGQDLDSCSP 120
KELKDIGNQL EISLSNIRAR KTQLFEEQIE QLQEKETLLL MENARLSKQC GAQPLQQSNQ 180
VVSYLSSCSK NSDIVETDLY IGLPQMRCL*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | MADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}. |
