PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Basic Information? help Back to Top

TF ID

SapurV1A.0397s0090.6.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

C2H2

Protein Properties

Length: 259aa MW: 27513.3 Da PI: 4.8258

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0397s0090.6.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00034	106	128	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H SapurV1A.0397s0090.6.p 106 FSCNYCQRKFFSSQALGGHQNAH 128 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.78E-6	104	133	No hit	No description
PROSITE profile	PS50157	11.344	106	133	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	108	128	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MKPIIDLEVE ATSENVSEAS SQVASNLSNQ ENSAGPSNDS LTNSSYLTNA IAAHSGSEMV 60 SLDLTLRFNN DESGGRDSVG LSLSSTSESS NEPASRTTAE AIPRVFSCNY CQRKFFSSQA 120 LGGHQNAHKR ERTLAKRAIR MGIFSERYAS LASLPLHGSS FRSLGIEAHS SVHQNFAPPV 180 RSLEISSGAR FDNGYAGLPV FMEDDEAELL WPGSFRQAAV ADGARPSFVV AGSSNMSFFG 240 ATPPVDLDDS APDLTLKL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0397s0090.6.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011043913.1	1e-165	PREDICTED: zinc finger protein 4-like
Refseq	XP_011043914.1	1e-165	PREDICTED: zinc finger protein 4-like
Refseq	XP_024454432.1	1e-165	zinc finger protein 4
Refseq	XP_024454433.1	1e-165	zinc finger protein 4
TrEMBL	B9H3D1	1e-164	B9H3D1_POPTR; Uncharacterized protein
STRING	POPTR_0004s08240.1	1e-165	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66140.1	9e-52	zinc finger protein 4

Link Out ? help Back to Top
Phytozome	SapurV1A.0397s0090.6.p